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基于 NGS 的 SNP 单体型分析在甲基丙二酸血症 PGT-M 中的临床应用。

Clinical application of NGS-based SNP haplotyping for PGT-M of methylmalonic acidemia.

机构信息

Medical Genetics Centre, Northwest Women's and Children's Hospital, Xi'an, China.

Assisted Reproduction Centre, Northwest Women's and Children's Hospital, Xi'an, China.

出版信息

Syst Biol Reprod Med. 2022 Feb;68(1):80-88. doi: 10.1080/19396368.2021.2005718. Epub 2021 Dec 16.

DOI:10.1080/19396368.2021.2005718
PMID:34913786
Abstract

This study describes a successful case of preimplantation genetic testing for the monogenic disease (PGT-M) of methylmalonic acidemia (MMA). To avoid the transmission of pathogenic mutations and unnecessary pregnancy termination we applied next-generation sequencing (NGS)-based haplotyping on a couple with a previously deceased MMA offspring. After embryo preparation, all samples were amplified successfully by whole genome amplification. We performed preimplantation genetic testing for aneuploidy (PGT-A) to determine the copy number of embryos' chromosomes. PGT-A results showed five blastocysts (2, 11, 14, 15 and 16) with balanced chromosomes (46, XN). Two techniques were used for PGT-M. Sanger sequencing was used to detect the mutations of gene directly, and NGS-based single nucleotide polymorphism (SNP) haplotyping was used to distinguish the chromosomes that carried the mutation. Sanger sequencing and NGS-based SNP haplotyping confirmed that samples 2 and 15 carried c.730insTT, samples 11 and 15 carried c.1105 C > T and samples 14 and 16 did not carry any mutation. Thus, blastocyst 14 was transferred into the mother's uterus. After prenatal diagnosis at 18 weeks of gestation, a healthy infant without mutation was born at full term. This study highlights the efficiency of NGS-based SNP haplotyping for PGT-M of MMA.: MMA: methylmalonic acidemia; MMUT: methylmalonyl-CoA mutase; PGT-M: preimplantation genetic testing for monogenic disease; PGD: preimplantation genetic diagnosis; IVF: in vitro fertilization; ADO: allele dropout; WGA: whole genome amplification; SNP: single nucleotide polymorphism; NGS: next-generation sequencing; PND: prenatal diagnosis; ICSI: intracytoplasmic sperm injection; TE: trophectoderm; DOP-PCR: degenerate oligonucleotide primed polymerase chain reaction; PGT-A: preimplantation genetic testing for aneuploidy; PCR: polymerase chain reaction.

摘要

本研究描述了一例甲基丙二酸血症(MMA)单基因疾病(PGT-M)的胚胎植入前遗传学检测成功案例。为避免致病性突变的传递和不必要的妊娠终止,我们对一对先前有 MMA 死产儿的夫妇应用了基于下一代测序(NGS)的单体型分析。胚胎制备后,所有样本均通过全基因组扩增成功扩增。我们进行了胚胎植入前非整倍体检测(PGT-A)以确定胚胎染色体的拷贝数。PGT-A 结果显示有五个囊胚(2、11、14、15 和 16)具有平衡染色体(46,XN)。我们使用了两种技术进行 PGT-M。Sanger 测序直接用于检测基因突变,NGS 单核苷酸多态性(SNP)单体型分析用于区分携带突变的染色体。Sanger 测序和 NGS-SNP 单体型分析证实,样本 2 和 15 携带 c.730insTT,样本 11 和 15 携带 c.1105C>T,样本 14 和 16 未携带任何突变。因此,将囊胚 14 移植到母亲子宫内。在 18 周妊娠时进行产前诊断后,足月分娩出一名无突变的健康婴儿。本研究强调了 NGS-SNP 单体型分析在 MMA 的 PGT-M 中的有效性。MMA:甲基丙二酸血症;MMUT:甲基丙二酰辅酶 A 变位酶;PGT-M:单基因疾病的胚胎植入前遗传学检测;PGD:胚胎植入前遗传学诊断;IVF:体外受精;ADO:等位基因缺失;WGA:全基因组扩增;SNP:单核苷酸多态性;NGS:下一代测序;PND:产前诊断;ICSI:胞质内精子注射;TE:滋养外胚层;DOP-PCR:简并寡核苷酸引物聚合酶链反应;PGT-A:非整倍体的胚胎植入前遗传学检测;PCR:聚合酶链反应。

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引用本文的文献

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Case report: Successful PGT-M based on the identification of a spliceogenic variant in the gene through Minigene assay.病例报告:通过小基因检测鉴定基因中的剪接变异体后成功进行胚胎植入前遗传学检测-单基因病检测(PGT-M)
Front Genet. 2024 Oct 16;15:1456293. doi: 10.3389/fgene.2024.1456293. eCollection 2024.
2
A healthy live birth after mosaic blastocyst transfer in preimplantation genetic testing for GATA1-related cytopenia combined with HLA matching.在 GATA1 相关血细胞减少症联合 HLA 配型的胚胎植入前遗传学检测中,通过马赛克囊胚移植实现健康活产。
BMC Med Genomics. 2024 Jul 3;17(1):177. doi: 10.1186/s12920-024-01951-2.
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A successful case of preimplantation genetic testing for monogenic disorder for aplasia cutis congenita.
先天性皮肤发育不全单基因疾病胚胎植入前基因检测成功案例。
Front Pediatr. 2022 Nov 15;10:1005272. doi: 10.3389/fped.2022.1005272. eCollection 2022.