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全外显子测序鉴定出自闭症/智力障碍的新候选基因。

New Candidates for Autism/Intellectual Disability Identified by Whole-Exome Sequencing.

机构信息

Medical Genetics, University of Siena, 53100 Siena, Italy.

Med Biotech Hub and Competence Center, Department of Medical Biotechnologies, University of Siena, 53100 Siena, Italy.

出版信息

Int J Mol Sci. 2021 Dec 14;22(24):13439. doi: 10.3390/ijms222413439.

Abstract

Intellectual disability (ID) is characterized by impairments in the cognitive processes and in the tasks of daily life. It encompasses a clinically and genetically heterogeneous group of neurodevelopmental disorders often associated with autism spectrum disorder (ASD). Social and communication abilities are strongly compromised in ASD. The prevalence of ID/ASD is 1-3%, and approximately 30% of the patients remain without a molecular diagnosis. Considering the extreme genetic locus heterogeneity, next-generation sequencing approaches have provided powerful tools for candidate gene identification. Molecular diagnosis is crucial to improve outcome, prevent complications, and hopefully start a therapeutic approach. Here, we performed parent-offspring trio whole-exome sequencing (WES) in a cohort of 60 mostly syndromic ID/ASD patients and we detected 8 pathogenic variants in genes already known to be associated with ID/ASD (, , , , , , , and . We found four de novo disruptive variants of four novel candidate ASD/ID genes: , , , . We additionally selected via bioinformatic tools many variants in unknown genes that alone or in combination can contribute to the phenotype. In conclusion, our data confirm the efficacy of WES in detecting pathogenic variants of known and novel ID/ASD genes.

摘要

智力残疾(ID)的特征是认知过程和日常生活任务的损伤。它包含一组临床上和遗传上异质的神经发育障碍,通常与自闭症谱系障碍(ASD)有关。ASD 患者的社交和沟通能力严重受损。ID/ASD 的患病率为 1-3%,大约 30%的患者仍然没有分子诊断。考虑到极端的遗传基因座异质性,下一代测序方法为候选基因鉴定提供了强大的工具。分子诊断对于改善预后、预防并发症以及希望开始治疗方法至关重要。在这里,我们对 60 名主要为综合征性 ID/ASD 患者的亲子三代全外显子组测序(WES)进行了检测,并在已经与 ID/ASD 相关的基因中发现了 8 个致病性变异体(,,,,,,, 和 )。我们发现了四个新的候选 ASD/ID 基因中的四个新的从头破坏变异体:,,, 。我们还通过生物信息学工具选择了许多单独或组合可能导致表型的未知基因中的变异体。总之,我们的数据证实了 WES 在检测已知和新的 ID/ASD 基因的致病性变异体方面的有效性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb2e/8707363/5210daca278c/ijms-22-13439-g001a.jpg

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