Gancheva M S, Losev M R, Gurina A A, Poliushkevich L O, Dodueva I E, Lutova L A
Saint Petersburg State University, St. Petersburg, Russia.
Federal Research Center the N.I. Vavilov All-Russian Institute of Plant Genetic Resources (VIR), St. Petersburg, Russia.
Vavilovskii Zhurnal Genet Selektsii. 2021 Nov;25(7):746-753. doi: 10.18699/VJ21.085.
CLE (CLV3/ESR) is one of the most important groups of peptide phytohormones: its members regulate the development of various plant organs and tissues, as well as interaction with some parasites and symbionts and response to environmental factors. In this regard, the identif ication and study of the CLE genes encoding the peptides of this group in cultivated plants are of great practical interest. Relatively little is known about the functions of CLE peptides in potato, since the CLE genes of the potato Solanum phureja Juz. et Buk. were characterized only in 2021. At the same time, potato includes plenty of tuberous species of the genus Solanum L., both wild and cultivated, and the diversity of its forms may depend on differences in the sequences of CLE genes. In this work, we performed a search for and analysis of the CLE gene sequences in three wild potato species (S. bukasovii Juz., S. verrucosum Schltdl., S. commersonii Dunal) and four cultivated species (S. chaucha Juz. et Buk., S. curtilobum Juz. et Buk., S. juzepczukii Juz. et Buk., S. ajanhuiri Juz. et Buk.). In total, we identif ied 332 CLE genes in the analyzed potato species: from 40 to 43 genes of this family for each potato species. All potato species taken for analysis had homologues of previously identif ied S. phureja CLE genes; at the same time, the CLE42 gene, which is absent from the S. phureja genome, is present in all other analyzed potato species. Polymorphism of CLE proteins of S. commersonii is signif icantly higher than that of other analyzed potato species, due to the fact that S. commersonii grows in places outside the growing areas of other potato species and this potato is probably not one of the ancestors of cultivated potato. We also found examples of polymorphism of domains of CLE proteins that carried different tions. Further study of potato CLE proteins will reveal their role in development, including regulation of productivity in this important agricultural crop.
CLE(CLV3/ESR)是最重要的肽类植物激素组之一:其成员调节各种植物器官和组织的发育,以及与一些寄生虫和共生体的相互作用和对环境因素的反应。在这方面,鉴定和研究栽培植物中编码该组肽的CLE基因具有重大的实际意义。关于CLE肽在马铃薯中的功能了解相对较少,因为马铃薯Solanum phureja Juz. et Buk.的CLE基因直到2021年才被表征。同时,马铃薯包括茄属大量的块茎物种,既有野生的也有栽培的,其形态的多样性可能取决于CLE基因序列的差异。在这项工作中,我们对三种野生马铃薯物种(S. bukasovii Juz.、S. verrucosum Schltdl.、S. commersonii Dunal)和四种栽培物种(S. chaucha Juz. et Buk.、S. curtilobum Juz. et Buk.、S. juzepczukii Juz. et Buk.、S. ajanhuiri Juz. et Buk.)中的CLE基因序列进行了搜索和分析。总共,我们在分析的马铃薯物种中鉴定出332个CLE基因:每个马铃薯物种有40到43个该家族的基因。所有用于分析的马铃薯物种都有先前鉴定的S. phureja CLE基因的同源物;同时,S. phureja基因组中不存在的CLE42基因存在于所有其他分析的马铃薯物种中。由于S. commersonii生长在其他马铃薯物种种植区域之外的地方,并且这种马铃薯可能不是栽培马铃薯的祖先之一,所以S. commersonii的CLE蛋白多态性明显高于其他分析的马铃薯物种。我们还发现了携带不同功能的CLE蛋白结构域多态性的例子。对马铃薯CLE蛋白的进一步研究将揭示它们在发育中的作用,包括对这种重要农作物生产力的调节。