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四种物种模型生物膜中的动态种间相互作用和稳健性。

Dynamic interspecies interactions and robustness in a four-species model biofilm.

机构信息

INRAE, AgroParisTech, Micalis Institute, Université Paris-Saclay, Jouy-en-Josas, France.

INRAE, MaIAGE, Université Paris-Saclay, Jouy-en-Josas, France.

出版信息

Microbiologyopen. 2021 Nov;10(6):e1254. doi: 10.1002/mbo3.1254.

DOI:10.1002/mbo3.1254
PMID:34964290
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8650569/
Abstract

Interspecific interactions within biofilms determine relative species abundance, growth dynamics, community resilience, and success or failure of invasion by an extraneous organism. However, deciphering interspecific interactions and assessing their contribution to biofilm properties and function remain a challenge. Here, we describe the constitution of a model biofilm composed of four bacterial species belonging to four different genera (Rhodocyclus sp., Pseudomonas fluorescens, Kocuria varians, and Bacillus cereus), derived from a biofilm isolated from an industrial milk pasteurization unit. We demonstrate that the growth dynamics and equilibrium composition of this biofilm are highly reproducible. Based on its equilibrium composition, we show that the establishment of this four-species biofilm is highly robust against initial, transient perturbations but less so towards continuous perturbations. By comparing biofilms formed from different numbers and combinations of the constituent species and by fitting a growth model to the experimental data, we reveal a network of dynamic, positive, and negative interactions that determine the final composition of the biofilm. Furthermore, we reveal that the molecular determinant of one negative interaction is the thiocillin I synthesized by the B. cereus strain, and demonstrate its importance for species distribution and its impact on robustness by mutational analysis of the biofilm ecosystem.

摘要

生物膜内的种间相互作用决定了相对物种丰度、生长动态、群落弹性以及外来生物入侵的成功或失败。然而,破译种间相互作用并评估其对生物膜特性和功能的贡献仍然是一个挑战。在这里,我们描述了由四种不同属的细菌(红环菌属、荧光假单胞菌、粘质沙雷氏菌和蜡样芽孢杆菌)组成的模型生物膜的构成,这些细菌源自从工业牛奶巴氏杀菌单元中分离出的生物膜。我们证明了这种生物膜的生长动态和平衡组成具有高度的重现性。基于其平衡组成,我们表明该四物种生物膜的建立对初始、瞬时扰动具有高度的稳健性,但对连续扰动的稳健性则较低。通过比较由不同数量和组合的组成物种形成的生物膜,并将生长模型拟合到实验数据中,我们揭示了一个动态的、正的和负的相互作用网络,这些相互作用决定了生物膜的最终组成。此外,我们还揭示了一种负相互作用的分子决定因素是由蜡样芽孢杆菌菌株合成的硫霉素 I,并通过对生物膜生态系统的突变分析证明了它对物种分布的重要性及其对稳健性的影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/1915bc8fcb00/MBO3-10-e1254-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/7bd2db8c2125/MBO3-10-e1254-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/7db1ad9722d3/MBO3-10-e1254-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/484708dbf1ba/MBO3-10-e1254-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/7471e60a68db/MBO3-10-e1254-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/7659e28cedfd/MBO3-10-e1254-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/ed2756d5eff4/MBO3-10-e1254-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/2e8c89ef8dbf/MBO3-10-e1254-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/1978a6eaf364/MBO3-10-e1254-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/1915bc8fcb00/MBO3-10-e1254-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/7bd2db8c2125/MBO3-10-e1254-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/7db1ad9722d3/MBO3-10-e1254-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/484708dbf1ba/MBO3-10-e1254-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/7471e60a68db/MBO3-10-e1254-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/7659e28cedfd/MBO3-10-e1254-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/ed2756d5eff4/MBO3-10-e1254-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/2e8c89ef8dbf/MBO3-10-e1254-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/1978a6eaf364/MBO3-10-e1254-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e48/8650569/1915bc8fcb00/MBO3-10-e1254-g003.jpg

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