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对海洋真菌和蘑菇中的抗病毒化合物进行计算机辅助生物勘探,以快速开发抗SARS-CoV-2的营养保健品。

In silico bioprospecting of antiviral compounds from marine fungi and mushroom for rapid development of nutraceuticals against SARS-CoV-2.

作者信息

Srivastav Amit Kumar, Jaiswal Jyoti, Kumar Umesh

机构信息

School of Nano Sciences, Central University of Gujarat, Gandhinagar, India.

出版信息

J Biomol Struct Dyn. 2023 Mar;41(5):1574-1585. doi: 10.1080/07391102.2021.2023048. Epub 2021 Dec 31.

Abstract

Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) affects human respiratory function that causes COVID-19 disease. COVID-19 has spread rapidly all over the world and became a pandemic within no time. Therefore, it is the need of hour to screen potential lead candidates from natural resources like edible mushrooms and marine fungi. These natural resources are very less explored till now and known to be the source for many medicinal compounds with several health benefits. These medicinal compounds can be easily exploited for the faster development of nutraceuticals for controlling SARS-CoV-2 infections. Our Insilico research suggests, bioactive compounds originating from mushroom and marine fungi shows strong potential to interact with ACE2 receptor or main protease of SARS-CoV-2, showing the inhibition activity towards the enzymatic protease. We performed a series of Insilico studies for the validation of our results, which includes Molecular docking, drug likeness property investigation by Swiss ADME tools, MD simulation, and thermodynamically stable free binding energy calculation. Overall, these results suggest that Ganodermadiol and Heliantriol F bioactive compounds originating from edible mushroom has strong potential to be developed as low-cost nutraceutical against SARS-CoV-2 viral infection. The drug candidate isolated from marine fungi and edible mushroom are highly unexplored for the development of potential alternative drug against SARS-CoV-2 virus with minimum side effects. Though our in silico studies of these compounds are showing a promising results against SARS-CoV-2 main protease and ACE2 receptor binding domain, the effectiveness of these bioactive compounds should be further validated by proper clinical trials.Communicated by Ramaswamy H. Sarma.

摘要

严重急性呼吸综合征冠状病毒2(SARS-CoV-2)会影响人类呼吸功能,引发新冠肺炎疾病。新冠肺炎已在全球迅速传播,很快便成为大流行病。因此,当下亟需从食用蘑菇和海洋真菌等自然资源中筛选潜在的先导化合物。到目前为止,这些自然资源的探索程度很低,但已知它们是许多具有多种健康益处的药用化合物的来源。这些药用化合物可轻易用于更快开发用于控制SARS-CoV-2感染的营养保健品。我们的计算机模拟研究表明,源自蘑菇和海洋真菌的生物活性化合物显示出与SARS-CoV-2的ACE2受体或主要蛋白酶相互作用的强大潜力,对该酶蛋白酶具有抑制活性。我们进行了一系列计算机模拟研究以验证我们的结果,包括分子对接、通过瑞士ADME工具进行药物相似性性质研究、分子动力学模拟以及热力学稳定的自由结合能计算。总体而言,这些结果表明,源自食用蘑菇的灵芝二醇和半日花三醇F生物活性化合物具有很强的潜力,可被开发为低成本的抗SARS-CoV-2病毒感染营养保健品。从海洋真菌和食用蘑菇中分离出的候选药物在开发具有最小副作用的潜在抗SARS-CoV-2病毒替代药物方面尚未得到充分探索。尽管我们对这些化合物的计算机模拟研究显示出针对SARS-CoV-2主要蛋白酶和ACE2受体结合域的有前景的结果,但这些生物活性化合物的有效性仍应通过适当的临床试验进一步验证。由拉马斯瓦米·H·萨尔马传达。

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