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溶液核磁共振和外消旋晶体学为一类新型环状植物肽的结构提供了见解。

Solution NMR and racemic crystallography provide insights into a novel structural class of cyclic plant peptides.

作者信息

Payne Colton D, Vadlamani Grishma, Hajiaghaalipour Fatemeh, Muhammad Taj, Fisher Mark F, Andersson Håkan S, Göransson Ulf, Clark Richard J, Bond Charles S, Mylne Joshua S, Rosengren K Johan

机构信息

The University of Queensland, School of Biomedical Sciences Brisbane QLD 4072 Australia

Curtin University, Centre for Crop and Disease Management, School of Molecular and Life Sciences Bentley WA 6102 Australia.

出版信息

RSC Chem Biol. 2021 Sep 13;2(6):1682-1691. doi: 10.1039/d1cb00155h. eCollection 2021 Dec 2.

DOI:10.1039/d1cb00155h
PMID:34977583
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8637875/
Abstract

Head-to-tail cyclic and disulfide-rich peptides are natural products with applications in drug design. Among these are the PawS-Derived Peptides (PDPs) produced in seeds of the daisy plant family. PDP-23 is a unique member of this class in that it is twice the typical size and adopts two β-hairpins separated by a hinge region. The β-hairpins, both stabilised by a single disulfide bond, fold together into a V-shaped tertiary structure creating a hydrophobic core. In water two PDP-23 molecules merge their hydrophobic cores to form a square prism quaternary structure. Here, we synthesised PDP-23 and its enantiomer comprising d-amino acids and achiral glycine, which allowed us to confirm these solution NMR structural data by racemic crystallography. Furthermore, we discovered the related PDP-24. NMR analysis showed that PDP-24 does not form a dimeric structure and it has poor water solubility, but in less polar solvents adopts near identical secondary and tertiary structure to PDP-23. The natural role of these peptides in plants remains enigmatic, as we did not observe any antimicrobial or insecticidal activity. However, the plasticity of these larger PDPs and their ability to change structure under different conditions make them appealing peptide drug scaffolds.

摘要

头对尾环状且富含二硫键的肽是可应用于药物设计的天然产物。其中包括在菊科植物种子中产生的雏菊衍生肽(PDPs)。PDP - 23是这类肽中的独特成员,其大小是典型肽的两倍,并且采用由铰链区隔开的两个β - 发夹结构。这两个β - 发夹结构均由单个二硫键稳定,它们折叠在一起形成V形三级结构,从而形成一个疏水核心。在水中,两个PDP - 23分子合并它们的疏水核心以形成四方棱柱四级结构。在此,我们合成了PDP - 23及其包含d - 氨基酸和非手性甘氨酸的对映体,这使我们能够通过外消旋晶体学确认这些溶液核磁共振结构数据。此外,我们发现了相关的PDP - 24。核磁共振分析表明,PDP - 24不形成二聚体结构,并且其水溶性较差,但在极性较小的溶剂中采用与PDP - 23几乎相同的二级和三级结构。这些肽在植物中的天然作用仍然不明,因为我们未观察到任何抗菌或杀虫活性。然而,这些较大的PDPs的可塑性以及它们在不同条件下改变结构的能力使它们成为有吸引力的肽类药物支架。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d6b/8637875/19441e3a5a05/d1cb00155h-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d6b/8637875/e1d7ab962786/d1cb00155h-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d6b/8637875/6afa0e6aa697/d1cb00155h-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d6b/8637875/0a5bc0188a9c/d1cb00155h-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d6b/8637875/19441e3a5a05/d1cb00155h-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d6b/8637875/e1d7ab962786/d1cb00155h-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d6b/8637875/6afa0e6aa697/d1cb00155h-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d6b/8637875/0a5bc0188a9c/d1cb00155h-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d6b/8637875/19441e3a5a05/d1cb00155h-f4.jpg

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