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对瓦拉尼及其合著者所著的《IS6家族,包括IS26在内的临床重要插入序列组》的评论

Comment on "the IS6 family, a clinically important group of insertion sequences including IS26" by Varani and co-authors.

作者信息

Hall Ruth M

机构信息

School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, 2006, Australia.

出版信息

Mob DNA. 2022 Jan 3;13(1):1. doi: 10.1186/s13100-021-00257-9.

DOI:10.1186/s13100-021-00257-9
PMID:34980247
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8722046/
Abstract

The insertion sequence IS26 has long been known to play a major role in the recruitment of antibiotic resistance genes into the mobile resistance gene pool of Gram-negative bacteria and IS26 also plays a major role in their subsequent broad dissemination. Related IS, IS431/257 and IS1216 are important in the same roles in Gram positive bacteria. However, until recently the properties of IS26 movement that could potentially explain this ability had not been explored. A much needed insight has come from our recent demonstration that IS26 uses a novel targeted mechanism that is conservative. The targeted conservative mechanism is much more efficient than the known replicative mechanism, which is now more accurately called copy-in. A recent review "The IS6 family, a clinically important group of insertion sequences including IS26" by Varani, He, Siguier, Ross and Chandler published in Mobile DNA has substantially misrepresented the recent studies on the targeted conservative mechanism and at the same time incorrectly implied that any mechanism established for IS26 can be assumed to apply to a range of IS that are at best very distantly related. A few of the most important issues are examined in this comment. Readers are advised to consult the original literature to check facts before drawing firm conclusions.

摘要

插入序列IS26长期以来被认为在将抗生素抗性基因招募到革兰氏阴性菌的移动抗性基因库中起主要作用,并且IS26在其随后的广泛传播中也起主要作用。相关的插入序列IS431/257和IS1216在革兰氏阳性菌中在相同作用方面很重要。然而,直到最近,可能解释这种能力的IS26移动特性尚未得到探索。我们最近证明IS26使用一种新型的靶向保守机制,这带来了急需的见解。这种靶向保守机制比已知的复制机制(现在更准确地称为“复制入”)效率高得多。Varani、He、Siguier、Ross和Chandler最近在《移动DNA》上发表的一篇综述《IS6家族,包括IS26在内的临床上重要的插入序列组》严重歪曲了关于靶向保守机制的最新研究,同时错误地暗示为IS26建立的任何机制都可以假定适用于一系列充其量只是远缘相关的插入序列。本评论探讨了一些最重要的问题。建议读者在得出确凿结论之前查阅原始文献以核实事实。

相似文献

1
Comment on "the IS6 family, a clinically important group of insertion sequences including IS26" by Varani and co-authors.对瓦拉尼及其合著者所著的《IS6家族,包括IS26在内的临床重要插入序列组》的评论
Mob DNA. 2022 Jan 3;13(1):1. doi: 10.1186/s13100-021-00257-9.
2
Targeted Conservative Cointegrate Formation Mediated by IS Family Members Requires Sequence Identity at the Reacting End.靶向保守共整合形成介导的 IS 家族成员需要在反应末端具有序列同一性。
mSphere. 2021 Jan 27;6(1):e01321-20. doi: 10.1128/mSphere.01321-20.
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IS Family Members IS and IS Also Form Cointegrates by Copy-In and Targeted Conservative Routes.IS 家族成员 IS 也是通过复制和靶向保守途径形成共整合体的。
mSphere. 2020 Jan 8;5(1):e00811-19. doi: 10.1128/mSphere.00811-19.
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IS and the IS family: versatile resistance gene movers and genome reorganizers.IS 及其家族:多功能抗性基因转移因子和基因组重排因子。
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Movement of IS26-associated antibiotic resistance genes occurs via a translocatable unit that includes a single IS26 and preferentially inserts adjacent to another IS26.与IS26相关的抗生素抗性基因通过一个可转移单元移动,该单元包含单个IS26,并优先插入到另一个IS26附近。
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IS26-Mediated Precise Excision of the IS26-aphA1a Translocatable Unit.IS26介导的IS26-aphA1a可转座单元的精确切除。
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The RuvABC Holliday Junction Processing System Is Not Required for IS-Mediated Targeted Conservative Cointegrate Formation.RuvABC Holliday 连接处理系统并非 IS 介导的靶向保守整合形成所必需。
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The IS6 family, a clinically important group of insertion sequences including IS26.IS6家族,是包括IS26在内的一组临床上重要的插入序列。
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Response from Varani et al. to "Comment on 'the IS6 family, a clinically important group of insertion sequences including IS26' by Ruth M. Hall".瓦拉尼等人对露丝·M·霍尔的《对“IS6家族,一组包括IS26在内的具有临床重要性的插入序列”的评论》的回应。
Mob DNA. 2022 Jan 3;13(1):2. doi: 10.1186/s13100-021-00258-8.

引用本文的文献

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本文引用的文献

1
The IS6 family, a clinically important group of insertion sequences including IS26.IS6家族,是包括IS26在内的一组临床上重要的插入序列。
Mob DNA. 2021 Mar 23;12(1):11. doi: 10.1186/s13100-021-00239-x.
2
IS26 cannot move alone.IS26 不能单独移动。
J Antimicrob Chemother. 2021 May 12;76(6):1428-1432. doi: 10.1093/jac/dkab055.
3
Targeted Conservative Cointegrate Formation Mediated by IS Family Members Requires Sequence Identity at the Reacting End.靶向保守共整合形成介导的 IS 家族成员需要在反应末端具有序列同一性。
mSphere. 2021 Jan 27;6(1):e01321-20. doi: 10.1128/mSphere.01321-20.
4
Structures bounded by directly-oriented members of the IS26 family are pseudo-compound transposons.由IS26家族直接定向成员界定的结构是假复合转座子。
Plasmid. 2020 Sep;111:102530. doi: 10.1016/j.plasmid.2020.102530. Epub 2020 Aug 29.
5
IS Family Members IS and IS Also Form Cointegrates by Copy-In and Targeted Conservative Routes.IS 家族成员 IS 也是通过复制和靶向保守途径形成共整合体的。
mSphere. 2020 Jan 8;5(1):e00811-19. doi: 10.1128/mSphere.00811-19.
6
An analysis of the IS/IS family of insertion sequences: is it a single family?插入序列 IS/IS 家族分析:它是一个单一的家族吗?
Microb Genom. 2019 Sep;5(9). doi: 10.1099/mgen.0.000291. Epub 2019 Sep 5.
7
Targeted conservative formation of cointegrates between two DNA molecules containing IS26 occurs via strand exchange at either IS end.通过在任一IS末端进行链交换,在含有IS26的两个DNA分子之间进行有针对性的保守共整合体形成。
Mol Microbiol. 2017 Nov;106(3):409-418. doi: 10.1111/mmi.13774. Epub 2017 Sep 4.
8
IS26-Mediated Formation of Transposons Carrying Antibiotic Resistance Genes.IS26介导的携带抗生素抗性基因的转座子的形成。
mSphere. 2016 Apr 6;1(2). doi: 10.1128/mSphere.00038-16. eCollection 2016 Mar-Apr.
9
Movement of IS26-associated antibiotic resistance genes occurs via a translocatable unit that includes a single IS26 and preferentially inserts adjacent to another IS26.与IS26相关的抗生素抗性基因通过一个可转移单元移动,该单元包含单个IS26,并优先插入到另一个IS26附近。
mBio. 2014 Oct 7;5(5):e01801-14. doi: 10.1128/mBio.01801-14.