Harmer Christopher J, Hall Ruth M
School of Molecular Bioscience, The University of Sydney, Sydney, New South Wales, Australia.
mSphere. 2016 Apr 6;1(2). doi: 10.1128/mSphere.00038-16. eCollection 2016 Mar-Apr.
The IS26 transposase, Tnp26, catalyzes IS26 movement to a new site and deletion or inversion of adjacent DNA via a replicative route. The intramolecular deletion reaction produces a circular molecule consisting of a DNA segment and a single IS26, which we call a translocatable unit or TU. Recently, Tnp26 was shown to catalyze an additional intermolecular, conservative reaction between two preexisting copies of IS26 in different plasmids. Here, we have investigated the relative contributions of homologous recombination and Tnp26-catalyzed reactions to the generation of a transposon from a TU. Circular TUs containing the aphA1a kanamycin and neomycin resistance gene or the tet(D) tetracycline resistance determinant were generated in vitro and transformed into Escherichia coli recA cells carrying R388::IS26. The TU incorporated next to the IS26 in R388::IS26 forms a transposon with the insertion sequence (IS) in direct orientation. Introduction of a second TU produced regions containing both the aphA1a gene and the tet(D) determinant in either order but with only three copies of IS26. The integration reaction, which required a preexisting IS26, was precise and conservative and was 50-fold more efficient when both IS26 copies could produce an active Tnp26. When both ISs were inactivated by a frameshift in tnp26, TU incorporation was not detected in E. coli recA cells, but it did occur in E. coli recA (+) cells. However, the Tnp-catalyzed reaction was 100-fold more efficient than RecA-dependent homologous recombination. The ability of Tnp26 to function in either a replicative or conservative mode is likely to explain the prominence of IS26-bounded transposons in the resistance regions found in Gram-negative bacteria. IMPORTANCE In Gram-negative bacteria, IS26 recruits antibiotic resistance genes into the mobile gene pool by forming transposons carrying many different resistance genes. In addition to replicative transposition, IS26 was recently shown to use a novel conservative movement mechanism in which an incoming IS26 targets a preexisting one. Here, we have demonstrated how IS26-bounded class I transposons can be produced from translocatable units (TUs) containing only an IS26 and a resistance gene via the conservative reaction. TUs were incorporated next to an existing IS26, creating a class I transposon, and if the targeted IS26 is in a transposon, the product resembles two transposons sharing a central IS26, a configuration observed in some resistance regions and when a transposon is tandemly duplicated. Though homologous recombination could also incorporate a TU, Tnp26 is far more efficient. This provides insight into how IS26 builds transposons and brings additional transposons into resistance regions.
IS26转座酶Tnp26催化IS26移动到新位点,并通过复制途径使相邻DNA发生缺失或倒位。分子内缺失反应产生一个由DNA片段和单个IS26组成的环状分子,我们将其称为可转座单元或TU。最近研究表明,Tnp26能催化不同质粒中两个预先存在的IS26拷贝之间发生额外的分子间保守反应。在此,我们研究了同源重组和Tnp26催化反应对从TU产生转座子的相对贡献。体外构建了含有aphA1a卡那霉素和新霉素抗性基因或tet(D)四环素抗性决定簇的环状TU,并将其转化到携带R388::IS26的大肠杆菌recA细胞中。TU整合到R388::IS26中的IS26旁边,形成一个插入序列(IS)呈正向排列的转座子。引入第二个TU会产生含有aphA1a基因和tet(D)决定簇的区域,二者顺序不定,但总共只有三个IS26拷贝。整合反应需要预先存在的IS26,该反应精确且保守,当两个IS26拷贝都能产生活性Tnp26时,效率提高50倍。当两个IS因tnp26移码而失活时,在大肠杆菌recA细胞中未检测到TU整合,但在大肠杆菌recA(+)细胞中确实发生了整合。然而,Tnp催化的反应比RecA依赖的同源重组效率高100倍。Tnp26以复制或保守模式发挥作用的能力可能解释了IS26边界转座子在革兰氏阴性菌抗性区域中的突出地位。重要性在革兰氏阴性菌中,IS26通过形成携带多种不同抗性基因的转座子,将抗生素抗性基因招募到可移动基因库中。除了复制转座外,最近研究表明IS26还使用一种新的保守移动机制,即新进入的IS26靶向预先存在的IS26。在此,我们证明了如何通过保守反应从仅含有一个IS26和一个抗性基因的可转座单元(TU)产生IS26边界的I类转座子。TU整合到现有IS26旁边,形成一个I类转座子,如果靶向的IS26位于转座子中,产物类似于两个共享一个中心IS26的转座子,这种结构在一些抗性区域以及转座子串联重复时可以观察到。虽然同源重组也可以整合TU,但Tnp26的效率要高得多。这为IS26如何构建转座子并将额外的转座子引入抗性区域提供了见解。