Chen Honglin, Hu Liangliang, Wang Lixia, Wang Suhua, Cheng Xuzhen
Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
J Appl Genet. 2022 May;63(2):223-236. doi: 10.1007/s13353-021-00675-8. Epub 2022 Jan 6.
Mung bean (Vigna radiata L. Wilczek) is an economically important grain legume crop in Asia, with high nutritional quality and potential in other parts of the world particularly arid and semiarid regions. Considering the potential adverse effects of drought, high salt, and other abiotic stresses on crop yield, significant efforts have been made to understand the underlying molecular mechanisms of tolerance to these abiotic stresses in legumes. In this study, a total of 186 putative AP2/ERF genes were identified, which were named VrERF1-186. These VrERF genes were classified into four main subfamilies according to the number of AP2 domains and sequence similarity, including 24 AP2 gene members, 81 ERF gene members, 79 DREB gene members, and 2 RAV members. VrERF genes are scattered across all 11 chromosomes and form small gene clusters on chromosomes due to segmental or tandem duplication. Promoter analysis revealed various cis-acting elements related to light, hormones, and stress responsiveness processes. The expression profiles of the VrERF genes in tissues during development and in response to abiotic stresses were assessed by transcriptome sequencing, and the selected reference genes were validated by qRT-PCR. A total of 174 VrERF genes were expressed in at least one of five tissues, while others showed distinct expression patterns in different tissues or under specific abiotic stress treatments, which indicates that VrERF genes are involved in developmental and environmental stress responses in V. radiata. In conclusion, the genome localization, genome-wide characterization, gene duplication, phylogenetic relationships, and expression pattern of VrERF genes in V. radiata were analyzed, and these results will lay the foundation for further functional analysis of these genes and improve stress tolerance to adverse conditions in plants.
绿豆(Vigna radiata L. Wilczek)是亚洲一种具有重要经济价值的豆类作物,营养品质高,在世界其他地区特别是干旱和半干旱地区具有种植潜力。考虑到干旱、高盐和其他非生物胁迫对作物产量的潜在不利影响,人们已做出大量努力来了解豆类对这些非生物胁迫的耐受性的潜在分子机制。在本研究中,共鉴定出186个假定的AP2/ERF基因,命名为VrERF1 - 186。这些VrERF基因根据AP2结构域的数量和序列相似性分为四个主要亚家族,包括24个AP2基因成员、81个ERF基因成员、79个DREB基因成员和2个RAV成员。VrERF基因分散在所有11条染色体上,由于片段或串联重复在染色体上形成小的基因簇。启动子分析揭示了与光、激素和胁迫响应过程相关的各种顺式作用元件。通过转录组测序评估了VrERF基因在发育过程中的组织表达谱以及对非生物胁迫的响应,并通过qRT-PCR验证了所选的参考基因。共有174个VrERF基因在五种组织中的至少一种中表达,而其他基因在不同组织或特定非生物胁迫处理下表现出不同的表达模式,这表明VrERF基因参与了绿豆的发育和环境胁迫响应。总之,分析了绿豆中VrERF基因的基因组定位、全基因组特征、基因重复、系统发育关系和表达模式,这些结果将为进一步对这些基因进行功能分析以及提高植物对不利条件的胁迫耐受性奠定基础。