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全基因组基因表达谱揭示鹅颗粒细胞独特的分子特征。

Genome-Wide Gene Expression Profiles Reveal Distinct Molecular Characteristics of the Goose Granulosa Cells.

作者信息

Gao Guangliang, Hu Silu, Zhang Keshan, Wang Haiwei, Xie Youhui, Zhang Changlian, Wu Rui, Zhao Xianzhi, Zhang Hongmei, Wang Qigui

机构信息

Chongqing Academy of Animal Sciences, Chongqing, China.

Institute of Animal Genetics and Breeding, College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, China.

出版信息

Front Genet. 2021 Dec 17;12:786287. doi: 10.3389/fgene.2021.786287. eCollection 2021.

Abstract

Granulosa cells (GCs) are decisive players in follicular development. In this study, the follicle tissues and GCs were isolated from the goose during the peak-laying period to perform hematoxylin-eosin staining and RNA-seq, respectively. Moreover, the dynamic mRNA and lncRNA expression profiles and mRNA-lncRNA network analysis were integrated to identify the important genes and lncRNAs. The morphological analysis showed that the size of the GCs did not significantly change, but the thickness of the granulosa layer cells differed significantly across the developmental stages. Subsequently, 14,286 mRNAs, 3,956 lncRNAs, and 1,329 TUCPs (transcripts with unknown coding potential) were detected in the GCs. We identified 37 common DEGs in the pre-hierarchical and hierarchical follicle stages, respectively, which might be critical for follicle development. Moreover, 3,089 significant time-course DEGs (Differentially expressed genes) and 13 core genes in 4 clusters were screened during goose GCs development. Finally, the network lncRNA G8399 with and , and lncRNA G8399 with and were found to be important for follicular development in GCs. Thus, the results would provide a rich resource for elucidating the reproductive biology of geese and accelerate the improvement of the egg-laying performance of geese.

摘要

颗粒细胞(GCs)是卵泡发育的关键参与者。在本研究中,分别从产蛋高峰期的鹅中分离出卵泡组织和颗粒细胞,进行苏木精-伊红染色和RNA测序。此外,整合动态mRNA和lncRNA表达谱以及mRNA-lncRNA网络分析,以鉴定重要基因和lncRNAs。形态学分析表明,颗粒细胞的大小没有显著变化,但颗粒层细胞的厚度在不同发育阶段有显著差异。随后,在颗粒细胞中检测到14286个mRNA、3956个lncRNA和1329个TUCP(编码潜能未知的转录本)。我们分别在分级前和分级卵泡阶段鉴定出37个共同的差异表达基因(DEGs),这可能对卵泡发育至关重要。此外,在鹅颗粒细胞发育过程中筛选出3089个显著的时间进程差异表达基因和4个簇中的13个核心基因。最后,发现lncRNA G8399与 和 ,以及lncRNA G8399与 和 组成的网络对颗粒细胞的卵泡发育很重要。因此,这些结果将为阐明鹅的生殖生物学提供丰富资源,并加速鹅产蛋性能的提高。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2171/8725158/f3813e893395/fgene-12-786287-g001.jpg

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