Fishery and Ecotoxicology Research Laboratory (Vice-Chancellor's Research Group), Department of Zoology, The University of Burdwan, Burdwan, 713104, West Bengal, India.
Parasitology and Microbiology Research Laboratory, Department of Zoology, The University of Burdwan, Burdwan, West Bengal, India.
Environ Sci Pollut Res Int. 2022 Apr;29(20):30622-30637. doi: 10.1007/s11356-021-17864-x. Epub 2022 Jan 7.
The present study evaluated the homology modelling, in silico prediction and characterization of Cyprinus carpio cytochrome P450, as well as molecular docking experiments between the modelled protein and the surfactants sodium dodecyl sulphate (SDS), sodium laureth sulphate (SLES) and cetylpyridinium chloride (CPC). Homology modelling of cytochrome P450 was performed using the best fit template structure. The structure was optimized with 3D refine, and the ultimate 3D structure was checked with PROCHEK and ERRATA. ExPASy's ProtParam was likewise used to analyse the modelled protein's physiochemical and stereochemical attributes. To establish the binding pattern of each ligand to the targeted protein and its effect on the overall protein conformation, molecular docking calculations and protein-ligand interactions were performed. Our in silico analysis revealed that hydrophobic interactions with the active site amino acid residues of cytochrome p450 were more prevalent than hydrogen bonds and salt bridges. The in vivo analysis exhibited that exposure of fish to sublethal concentrations (10% and 30% of 96 h LC) of SDS (0.34 and 1.02 mg/l), CPC (0.002 and 0.006 mg/l) and SLES (0.69 and 2.07 mg/l) at 15d, 30d and 45d adversely affected the oxidative stress and antioxidant enzymes (CAT, SOD, GST, GPx and MDA) in the liver of Cyprinus carpio. As a result, the study suggests that elicited oxidative stress, prompted by the induction of antioxidant enzymes activity, could be attributable to the stable binding of cytochrome P450 with SDS, CPC and SLES which ultimately leads to the evolution of antioxidant enzymes for its neutralization.
本研究评估了鲤鱼细胞色素 P450 的同源建模、计算机预测和特性分析,以及建模蛋白与表面活性剂十二烷基硫酸钠(SDS)、月桂醇聚醚硫酸酯(SLES)和氯化十六烷基吡啶(CPC)之间的分子对接实验。细胞色素 P450 的同源建模使用最佳拟合模板结构进行。结构用 3D refine 进行优化,最终的 3D 结构用 PROCHEK 和 ERRATA 进行检查。ExPASy 的 ProtParam 也用于分析建模蛋白的物理化学和立体化学属性。为了确定每个配体与目标蛋白的结合模式及其对整体蛋白构象的影响,进行了分子对接计算和蛋白-配体相互作用分析。我们的计算机分析表明,与细胞色素 p450 活性位点氨基酸残基的疏水相互作用比氢键和盐桥更普遍。体内分析表明,鱼类在亚致死浓度(96 小时 LC 的 10%和 30%)的 SDS(0.34 和 1.02 mg/l)、CPC(0.002 和 0.006 mg/l)和 SLES(0.69 和 2.07 mg/l)下暴露 15 天、30 天和 45 天,对鲤鱼肝脏的氧化应激和抗氧化酶(CAT、SOD、GST、GPx 和 MDA)产生不利影响。因此,该研究表明,由抗氧化酶活性诱导的氧化应激可能归因于细胞色素 P450 与 SDS、CPC 和 SLES 的稳定结合,最终导致抗氧化酶的进化以中和其毒性。