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使用机器学习对长期记录的局部场电位中的伪迹信号进行独立于通道的重建。

Channel-independent recreation of artefactual signals in chronically recorded local field potentials using machine learning.

作者信息

Fabietti Marcos, Mahmud Mufti, Lotfi Ahmad

机构信息

Department of Computer Science, Nottingham Trent University, Clifton Lane, NG11 8NS, Nottingham, UK.

Medical Technologies Innovation Facility, Nottingham Trent University, Clifton Lane, NG11 8NS, Nottingham, UK.

出版信息

Brain Inform. 2022 Jan 7;9(1):1. doi: 10.1186/s40708-021-00149-x.

DOI:10.1186/s40708-021-00149-x
PMID:34997378
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8741911/
Abstract

Acquisition of neuronal signals involves a wide range of devices with specific electrical properties. Combined with other physiological sources within the body, the signals sensed by the devices are often distorted. Sometimes these distortions are visually identifiable, other times, they overlay with the signal characteristics making them very difficult to detect. To remove these distortions, the recordings are visually inspected and manually processed. However, this manual annotation process is time-consuming and automatic computational methods are needed to identify and remove these artefacts. Most of the existing artefact removal approaches rely on additional information from other recorded channels and fail when global artefacts are present or the affected channels constitute the majority of the recording system. Addressing this issue, this paper reports a novel channel-independent machine learning model to accurately identify and replace the artefactual segments present in the signals. Discarding these artifactual segments by the existing approaches causes discontinuities in the reproduced signals which may introduce errors in subsequent analyses. To avoid this, the proposed method predicts multiple values of the artefactual region using long-short term memory network to recreate the temporal and spectral properties of the recorded signal. The method has been tested on two open-access data sets and incorporated into the open-access SANTIA (SigMate Advanced: a Novel Tool for Identification of Artefacts in Neuronal Signals) toolbox for community use.

摘要

获取神经元信号涉及多种具有特定电学特性的设备。与体内的其他生理信号源相结合,设备所感测到的信号常常会发生失真。有时这些失真在视觉上是可识别的,而在其他时候,它们会与信号特征叠加,使其很难被检测到。为了去除这些失真,需要对记录进行视觉检查并手动处理。然而,这种手动标注过程非常耗时,因此需要自动计算方法来识别和去除这些伪迹。现有的大多数伪迹去除方法都依赖于来自其他记录通道的额外信息,当存在全局伪迹或受影响的通道占记录系统的大多数时,这些方法就会失效。针对这一问题,本文报告了一种新颖的与通道无关的机器学习模型,用于准确识别并替换信号中存在的伪迹片段。用现有方法丢弃这些伪迹片段会导致再现信号出现不连续性,这可能会在后续分析中引入误差。为避免这种情况,所提出的方法使用长短期记忆网络预测伪迹区域的多个值,以重建记录信号的时间和频谱特性。该方法已在两个开放获取的数据集上进行了测试,并被纳入开放获取的SANTIA(SigMate Advanced:一种用于识别神经元信号中伪迹的新型工具)工具箱供社区使用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/d3fcd0bf6777/40708_2021_149_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/7faa99461ab0/40708_2021_149_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/e56aa9fb507c/40708_2021_149_Fig2_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/699b5f3b8091/40708_2021_149_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/8e3f23ebc89c/40708_2021_149_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/801c81b2daca/40708_2021_149_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/c4877296d9d8/40708_2021_149_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/616af55eac60/40708_2021_149_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/e0b44e3f56a2/40708_2021_149_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/d3fcd0bf6777/40708_2021_149_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/7faa99461ab0/40708_2021_149_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/e56aa9fb507c/40708_2021_149_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/01a32dde1d87/40708_2021_149_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/699b5f3b8091/40708_2021_149_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/8e3f23ebc89c/40708_2021_149_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/801c81b2daca/40708_2021_149_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/c4877296d9d8/40708_2021_149_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/616af55eac60/40708_2021_149_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/e0b44e3f56a2/40708_2021_149_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a79/8741911/d3fcd0bf6777/40708_2021_149_Fig10_HTML.jpg

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