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LPCAT1作为一种新的肝细胞癌预后分子标志物发挥作用。

LPCAT1 functions as a novel prognostic molecular marker in hepatocellular carcinoma.

作者信息

Zhang Hongbin, Xu Ke, Xiang Qin, Zhao Lijuan, Tan Benxu, Ju Ping, Lan Xiufu, Liu Yi, Zhang Jian, Fu Zheng, Li Chao, Wang Jinzhi, Song Jixiang, Xiao Yun, Cheng Zhaobo, Wang Yan, Zhang Shu, Xiang Tingxiu

机构信息

Department of Oncology, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Science, Jinan, Shandong 250117, PR China.

Department of Oncology, People's Hospital of Juxian County, Rizhao, Shandong 276599, PR China.

出版信息

Genes Dis. 2020 Jul 21;9(1):151-164. doi: 10.1016/j.gendis.2020.07.007. eCollection 2022 Jan.

Abstract

This study aimed to investigate the relationships between LPCAT1 expression and clinicopathologic parameters of hepatocellular carcinoma (HCC), further, to explore the effect of LPCAT1 on overall survival (OS) in patients with HCC, and its possible mechanism. Bioinformatics analysis using high throughput RNA-sequencing data from TCGA was utilized to explore the differential expression of LPCAT1 between normal and tumor tissues, and the associations between LPCAT1 expression and clinicopathological parameters. Survival analyses and subgroup survival analyses were utilized to elucidate the effect of LPCAT1 on OS in patients with HCC. Univariate analysis and multivariate analysis were used to investigate the prognostic factors. Potential LPCAT1 related tumor genes were identified by the methodology of differentially expressed genes (DEGs) screening. GO term enrichment analysis, KEGG pathway analysis and the PPI network were used to explore the potential mechanism. LPCAT1 was significantly overexpressed in HCC tumor tissues compared with normal tissues. The LPCAT1 expression was related to tumor grade, ECOG score, AFP and TNM stage, with values of 0.000, 0.000, 0.007 and 0.000, respectively. Multivariate analysis demonstrated that LPCAT1 expression was independently associated with OS, with an HR of 1.04 (CI: 1.01-1.06, = 0.003). The KEGG pathway enrichment analyses showed that overlapped DEGs mainly participate in the cell cycle. Finally, we identified a hub gene, CDK1, which has been reported to act on the cell cycle, consistent with the result of KEGG enrichment analysis. Collectively, these data confirmed LPCAT1 was upregulated in HCC, and was an independent predictor of the prognosis.

摘要

本研究旨在探讨溶血磷脂酰胆碱酰基转移酶1(LPCAT1)表达与肝细胞癌(HCC)临床病理参数之间的关系,进一步探究LPCAT1对HCC患者总生存期(OS)的影响及其可能机制。利用来自癌症基因组图谱(TCGA)的高通量RNA测序数据进行生物信息学分析,以探讨正常组织与肿瘤组织之间LPCAT1的差异表达,以及LPCAT1表达与临床病理参数之间的关联。采用生存分析和亚组生存分析来阐明LPCAT1对HCC患者OS的影响。采用单因素分析和多因素分析来研究预后因素。通过差异表达基因(DEG)筛选方法鉴定潜在的LPCAT1相关肿瘤基因。利用基因本体(GO)术语富集分析、京都基因与基因组百科全书(KEGG)通路分析和蛋白质-蛋白质相互作用(PPI)网络来探索潜在机制。与正常组织相比,LPCAT1在HCC肿瘤组织中显著高表达。LPCAT1表达与肿瘤分级、美国东部肿瘤协作组(ECOG)评分、甲胎蛋白(AFP)和TNM分期相关,其P值分别为0.000、0.000、0.007和0.000。多因素分析表明,LPCAT1表达与OS独立相关,风险比(HR)为1.04(置信区间:1.01-1.06,P = 0.003)。KEGG通路富集分析表明,重叠的DEG主要参与细胞周期。最后,我们鉴定出一个枢纽基因细胞周期蛋白依赖性激酶1(CDK1),据报道它作用于细胞周期,这与KEGG富集分析结果一致。总体而言,这些数据证实LPCAT1在HCC中上调,并且是预后的独立预测因子。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/380f/8720658/1893f6596774/gr1.jpg

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