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1
Nucleophilic re-activation of the PC1 beta-lactamase of Staphylococcus aureus and of the DD-peptidase of Streptomyces R61 after their inactivation by cephalosporins and cephamycins.金黄色葡萄球菌的PC1β-内酰胺酶和链霉菌R61的DD-肽酶被头孢菌素和头霉素灭活后亲核再活化。
Biochem J. 1987 Sep 15;246(3):651-8. doi: 10.1042/bj2460651.
2
Interaction between non-classical beta-lactam compounds and the Zn2+-containing G and serine R61 and R39 D-alanyl-D-alanine peptidases.非经典β-内酰胺化合物与含锌的G型和丝氨酸R61及R39 D-丙氨酰-D-丙氨酸肽酶之间的相互作用。
Biochem J. 1981 Oct 1;199(1):129-36. doi: 10.1042/bj1990129.
3
On the importance of a methyl group in beta-lactamase evolution: free energy profiles and molecular modeling.甲基基团在β-内酰胺酶进化中的重要性:自由能分布与分子建模
Biochemistry. 1999 Aug 10;38(32):10499-510. doi: 10.1021/bi990428e.
4
Binding of cephalothin and cefotaxime to D-ala-D-ala-peptidase reveals a functional basis of a natural mutation in a low-affinity penicillin-binding protein and in extended-spectrum beta-lactamases.头孢噻吩和头孢噻肟与D-丙氨酰-D-丙氨酸肽酶的结合揭示了低亲和力青霉素结合蛋白和超广谱β-内酰胺酶中自然突变的功能基础。
Biochemistry. 1995 Jul 25;34(29):9532-40. doi: 10.1021/bi00029a030.
5
The importance of the negative charge of beta-lactam compounds for the inactivation of the active-site serine DD-peptidase of Streptomyces R61.
FEBS Lett. 1987 Dec 10;225(1-2):218-22. doi: 10.1016/0014-5793(87)81161-4.
6
Mechanism of inhibition of the PC1 beta-lactamase of Staphylococcus aureus by cephalosporins: importance of the 3'-leaving group.头孢菌素对金黄色葡萄球菌PC1β-内酰胺酶的抑制机制:3'-离去基团的重要性
Biochemistry. 1985 Feb 12;24(4):903-10. doi: 10.1021/bi00325a014.
7
Toward better antibiotics: crystallographic studies of a novel class of DD-peptidase/beta-lactamase inhibitors.迈向更优抗生素:新型DD-肽酶/β-内酰胺酶抑制剂的晶体学研究
Biochemistry. 2004 Jun 8;43(22):7046-53. doi: 10.1021/bi049612c.
8
Beta-secondary and solvent deuterium kinetic isotope effects on catalysis by the Streptomyces R61 DD-peptidase: comparisons with a structurally similar class C beta-lactamase.链霉菌R61 DD-肽酶催化作用的β-二级和溶剂氘动力学同位素效应:与结构相似的C类β-内酰胺酶的比较。
Biochemistry. 1999 Feb 2;38(5):1469-77. doi: 10.1021/bi982308x.
9
The D-methyl group in beta-lactamase evolution: evidence from the Y221G and GC1 mutants of the class C beta-lactamase of Enterobacter cloacae P99.β-内酰胺酶进化中的D-甲基基团:来自阴沟肠杆菌P99的C类β-内酰胺酶Y221G和GC1突变体的证据
Biochemistry. 2005 May 24;44(20):7543-52. doi: 10.1021/bi050136f.
10
Transpeptidation reactions of a specific substrate catalyzed by the Streptomyces R61 DD-peptidase: the structural basis of acyl acceptor specificity.链霉菌R61 D-肽酶催化特定底物的转肽反应:酰基受体特异性的结构基础。
Biochemistry. 2005 Aug 2;44(30):9961-70. doi: 10.1021/bi0505417.

引用本文的文献

1
Detection of an enzyme isomechanism by means of the kinetics of covalent inhibition.通过共价抑制的动力学检测酶的同工酶机制。
Biochim Biophys Acta Proteins Proteom. 2021 Sep;1869(9):140681. doi: 10.1016/j.bbapap.2021.140681. Epub 2021 Jun 2.
2
The crystal structures of CDD-1, the intrinsic class D β-lactamase from the pathogenic Gram-positive bacterium Clostridioides difficile, and its complex with cefotaxime.CDD-1 的晶体结构,即来自致病性革兰阳性细菌艰难梭菌的固有类 D β-内酰胺酶,及其与头孢噻肟的复合物。
J Struct Biol. 2019 Dec 1;208(3):107391. doi: 10.1016/j.jsb.2019.09.008. Epub 2019 Sep 21.
3
Crystal structures of covalent complexes of β-lactam antibiotics with Escherichia coli penicillin-binding protein 5: toward an understanding of antibiotic specificity.β-内酰胺类抗生素与大肠埃希菌青霉素结合蛋白 5 的共价复合物的晶体结构:深入了解抗生素的特异性。
Biochemistry. 2010 Sep 21;49(37):8094-104. doi: 10.1021/bi100879m.
4
Effect of the 3'-leaving group on turnover of cephem antibiotics by a class C beta-lactamase.3'-离去基团对C类β-内酰胺酶催化头孢烯抗生素周转的影响。
Biochem J. 1989 Apr 1;259(1):255-60. doi: 10.1042/bj2590255.
5
Effect of side-chain amide thionation on turnover of beta-lactam substrates by beta-lactamases. Further evidence on the question of side-chain hydrogen-bonding in catalysis.β-内酰胺酶侧链酰胺硫代化对β-内酰胺底物周转的影响。关于催化过程中侧链氢键问题的进一步证据。
Biochem J. 1992 Sep 15;286 ( Pt 3)(Pt 3):857-62. doi: 10.1042/bj2860857.

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Tissue sulfhydryl groups.组织巯基
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2
beta-Lactamase proceeds via an acyl-enzyme intermediate. Interaction of the Escherichia coli RTEM enzyme with cefoxitin.β-内酰胺酶通过酰基酶中间体起作用。大肠杆菌RTEM酶与头孢西丁的相互作用。
Biochemistry. 1980 Jun 24;19(13):2895-901. doi: 10.1021/bi00554a012.
3
Pre-steady state beta-lactamase kinetics. Observation of a covalent intermediate during turnover of a fluorescent cephalosporin by the beta-lactamase of STaphylococcus aureus PC1.β-内酰胺酶的预稳态动力学。金黄色葡萄球菌PC1的β-内酰胺酶在荧光头孢菌素周转过程中共价中间体的观察。
J Biol Chem. 1981 Nov 25;256(22):11401-4.
4
Pre-steady state beta-lactamase kinetics. The trapping of a covalent intermediate and the interpretation of pH rate profiles.前稳态β-内酰胺酶动力学。共价中间体的捕获与pH速率曲线的解读。
J Biol Chem. 1983 Nov 10;258(21):13120-6.
5
beta-Lactamase-catalyzed hydrolysis of acyclic depsipeptides and acyl transfer to specific amino acid acceptors.β-内酰胺酶催化的无环缩肽水解及酰基转移至特定氨基酸受体。
Proc Natl Acad Sci U S A. 1984 Mar;81(5):1302-6. doi: 10.1073/pnas.81.5.1302.
6
Mechanism of action of penicillins: a proposal based on their structural similarity to acyl-D-alanyl-D-alanine.青霉素的作用机制:基于其与酰基-D-丙氨酰-D-丙氨酸结构相似性的一种假说
Proc Natl Acad Sci U S A. 1965 Oct;54(4):1133-41. doi: 10.1073/pnas.54.4.1133.
7
A spectrophotometric assay of beta-lactamase action on penicillins.一种关于β-内酰胺酶对青霉素作用的分光光度测定法。
Biochem J. 1974 Jun;139(3):789-90. doi: 10.1042/bj1390789.
8
Mechanism of inhibition of the PC1 beta-lactamase of Staphylococcus aureus by cephalosporins: importance of the 3'-leaving group.头孢菌素对金黄色葡萄球菌PC1β-内酰胺酶的抑制机制:3'-离去基团的重要性
Biochemistry. 1985 Feb 12;24(4):903-10. doi: 10.1021/bi00325a014.
9
Interactions of cephalosporins with the Streptomyces R61 DD-transpeptidase/carboxypeptidase. Influence of the 3'-substituent.头孢菌素与链霉菌R61 D-丙氨酰-D-丙氨酸转肽酶/羧肽酶的相互作用。3'-取代基的影响。
Biochem J. 1986 Aug 15;238(1):309-12. doi: 10.1042/bj2380309.
10
Mechanism of inhibition of RTEM-2 beta-lactamase by cephamycins: relative importance of the 7 alpha-methoxy group and the 3' leaving group.
Biochemistry. 1986 May 20;25(10):2934-41. doi: 10.1021/bi00358a030.

金黄色葡萄球菌的PC1β-内酰胺酶和链霉菌R61的DD-肽酶被头孢菌素和头霉素灭活后亲核再活化。

Nucleophilic re-activation of the PC1 beta-lactamase of Staphylococcus aureus and of the DD-peptidase of Streptomyces R61 after their inactivation by cephalosporins and cephamycins.

作者信息

Faraci W S, Pratt R F

机构信息

Department of Chemistry, Wesleyan University, Middletown, CT 06457.

出版信息

Biochem J. 1987 Sep 15;246(3):651-8. doi: 10.1042/bj2460651.

DOI:10.1042/bj2460651
PMID:3500712
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1148329/
Abstract

It has been shown previously [Faraci & Pratt (1985) Biochemistry 24, 903-910; (1986) Biochemistry 25, 2934-2941; (1986) Biochem. J. 238, 309-312] that certain beta-lactam-processing enzymes form inert acyl-enzymes with cephems that possess good leaving groups at the C-3' position. These inert species arise by elimination of the leaving group from the initially formed and more rapidly hydrolysing acyl-enzyme, which has the 'normal' cephalosporoate structure. The present paper shows that a strong nucleophile, thiophenoxide, can catalyse the re-activation of three examples of these inert acyl-enzymes, generated on reaction of cephalothin and cefoxitin with the PC1 beta-lactamase of Staphylococcus aureus and of cephalothin with D-alanyl-D-alanine transpeptidase/carboxypeptidase of Streptomyces R61. In view of the reversibility of the elimination reaction, demonstrated in model systems [Pratt & Faraci (1986) J. Am. Chem. Soc. 108, 5328-5333], this catalysis is proposed to arise through nucleophilic addition to the exo-methylene carbon atom of the inert acyl-enzyme to regenerate a more rapidly hydrolysing normal cephalosporoate. Strong support for this scenario was obtained through comparison of the kinetics of the catalysed re-activation reaction with those of turnover of the relevant 3'-thiophenoxycephems, thiophenoxycephalothin and thiophenoxycefoxitin. The enzymes appear to stabilize the products of the elimination reaction with respect to the normal cephalosporoate, but more strongly to destabilize the transition states. The effects of other nucleophiles, including cysteine, glycine amide and imidazole, on the above enzymes and on other beta-lactamases can be understood in terms of the model reaction kinetics and thermodynamics.

摘要

先前已有研究表明[法拉西和普拉特(1985年)《生物化学》24卷,903 - 910页;(1986年)《生物化学》25卷,2934 - 2941页;(1986年)《生物化学杂志》238卷,309 - 312页],某些β - 内酰胺加工酶会与在C - 3'位具有良好离去基团的头孢烯类形成惰性酰基酶。这些惰性物种是由最初形成且水解更快的酰基酶消除离去基团而产生的,该酰基酶具有“正常”的头孢菌素酸结构。本文表明,一种强亲核试剂苯硫酚盐可以催化这些惰性酰基酶的三个实例重新活化,这些惰性酰基酶是在头孢噻吩和头孢西丁与金黄色葡萄球菌的PC1β - 内酰胺酶反应以及头孢噻吩与链霉菌R61的D - 丙氨酰 - D - 丙氨酸转肽酶/羧肽酶反应时生成的。鉴于在模型系统中已证明消除反应的可逆性[普拉特和法拉西(1986年)《美国化学会志》108卷,5328 - 5333页],推测这种催化作用是通过亲核加成到惰性酰基酶的亚甲基碳原子上,以再生水解更快的正常头孢菌素酸。通过将催化重新活化反应的动力学与相关的3'-苯硫基头孢烯、苯硫基头孢噻吩和苯硫基头孢西丁的周转动力学进行比较,获得了对该设想的有力支持。这些酶似乎相对于正常头孢菌素酸稳定了消除反应的产物,但更强烈地使过渡态不稳定。根据模型反应动力学和热力学,可以理解包括半胱氨酸、甘氨酰胺和咪唑在内的其他亲核试剂对上述酶以及其他β - 内酰胺酶的影响。