Meng Fanzeng, Wang Yiting, Wang Guohao, Hu Tao, Xu La, Tang Kathy F J, Shi Weifeng, Zhang Fan, Dong Xuan, Huang Jie
College of Fisheries and Life Science, Shanghai Ocean University, Shanghai 201306, China.
Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Laboratory for Marine Fisheries Science and Food Production Processes, Pilot National Laboratory for Marine Science and Technology (Qingdao), Key Laboratory of Maricultural Organism Disease Control, Ministry of Agriculture and Rural Affairs, Qingdao Key Laboratory of Mariculture Epidemiology and Biosecurity, Qingdao 266071, China.
Animals (Basel). 2021 Dec 23;12(1):27. doi: 10.3390/ani12010027.
In a meta-transcriptome study of the giant freshwater prawn sampled in 2018 from a hatchery, we identified a variant of Macrobrachium rosenbergii golda virus (MrGV) in postlarvae without clinical signs. The virus belongs to the family , and the genome of this MrGV variant, Mr-18, consisted of 28,957 nucleotides, including 4 open reading frames (ORFs): (1) ORF1a, encoding a 3C-like protein (3CLP) (4933 aa); (2) ORF1b, encoding a replicase polyprotein (2877 aa); (3) ORF2, encoding a hypothetical nucleocapsid protein (125 aa); and (4) ORF3, encoding a glycoprotein (1503 aa). ORF1a overlaps with ORF1b with 40 nucleotides, where a -1 ribosomal frameshift with slippage sequence 5'-GGGUUUU-3' produces the pp1ab polyprotein. The genomic sequence of Mr-18 shared 97.80% identity with MrGV LH1-2018 discovered in Bangladesh. The amino acid sequence identities between them were 99.30% (ORF1a), 99.60% (ORF1b), 100.00% (ORF2), and 99.80% (ORF3), respectively. Phylogenetic analysis of the RNA-dependent RNA polymerase (RdRp) proteins revealed that they clustered together and formed a separate cluster from the genus . The finding of MrGV in China warrants further studies to determine its pathogenicity and prevalence within the region.
在一项对2018年从孵化场采集的罗氏沼虾进行的宏转录组研究中,我们在无临床症状的后期幼体中鉴定出罗氏沼虾戈达病毒(MrGV)的一个变体。该病毒属于 科,这个MrGV变体Mr - 18的基因组由28,957个核苷酸组成,包括4个开放阅读框(ORF):(1)ORF1a,编码一种3C样蛋白(3CLP)(4933个氨基酸);(2)ORF1b,编码一种复制酶多聚蛋白(2877个氨基酸);(3)ORF2,编码一种假定的核衣壳蛋白(125个氨基酸);以及(4)ORF3,编码一种糖蛋白(1503个氨基酸)。ORF1a与ORF1b有40个核苷酸重叠,其中一个带有滑移序列5'-GGGUUUU-3'的 -1核糖体移码产生pp1ab多聚蛋白。Mr - 18的基因组序列与在孟加拉国发现的MrGV LH1 - 2018具有97.80%的同一性。它们之间的氨基酸序列同一性分别为99.30%(ORF1a)、99.60%(ORF1b)、100.00%(ORF2)和99.80%(ORF3)。对RNA依赖性RNA聚合酶(RdRp)蛋白的系统发育分析表明,它们聚集在一起,并与 属形成一个单独的聚类。在中国发现MrGV这一情况值得进一步研究,以确定其在该地区的致病性和流行情况。