文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

KANPHOS:大脑中与激酶相关的神经蛋白磷酸化数据库。

KANPHOS: A Database of Kinase-Associated Neural Protein Phosphorylation in the Brain.

机构信息

Department of Cell Pharmacology, Graduate School of Medicine, Nagoya University, 65 Tsurumai, Nagoya 466-8550, Japan.

Institute for Comprehensive Medical Science, Fujita Health University, Toyoake 470-1192, Japan.

出版信息

Cells. 2021 Dec 24;11(1):47. doi: 10.3390/cells11010047.


DOI:10.3390/cells11010047
PMID:35011609
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8750479/
Abstract

Protein phosphorylation plays critical roles in a variety of intracellular signaling pathways and physiological functions that are controlled by neurotransmitters and neuromodulators in the brain. Dysregulation of these signaling pathways has been implicated in neurodevelopmental disorders, including autism spectrum disorder, attention deficit hyperactivity disorder and schizophrenia. While recent advances in mass spectrometry-based proteomics have allowed us to identify approximately 280,000 phosphorylation sites, it remains largely unknown which sites are phosphorylated by which kinases. To overcome this issue, previously, we developed methods for comprehensive screening of the target substrates of given kinases, such as PKA and Rho-kinase, upon stimulation by extracellular signals and identified many candidate substrates for specific kinases and their phosphorylation sites. Here, we developed a novel online database to provide information about the phosphorylation signals identified by our methods, as well as those previously reported in the literature. The "KANPHOS" (Kinase-Associated Neural Phospho-Signaling) database and its web portal were built based on a next-generation XooNIps neuroinformatics tool. To explore the functionality of the KANPHOS database, we obtained phosphoproteomics data for adenosine-A2A-receptor signaling and its downstream MAPK-mediated signaling in the striatum/nucleus accumbens, registered them in KANPHOS, and analyzed the related pathways.

摘要

蛋白质磷酸化在各种细胞内信号通路和生理功能中发挥着关键作用,这些信号通路和生理功能受大脑中的神经递质和神经调质的控制。这些信号通路的失调与神经发育障碍有关,包括自闭症谱系障碍、注意缺陷多动障碍和精神分裂症。虽然基于质谱的蛋白质组学的最新进展使我们能够鉴定出大约 280000 个磷酸化位点,但仍然不清楚哪些位点是由哪些激酶磷酸化的。为了解决这个问题,我们之前开发了综合筛选特定激酶(如 PKA 和 Rho-激酶)的靶底物的方法,这些靶底物在外源信号刺激下被鉴定出来,确定了许多特定激酶及其磷酸化位点的候选底物。在这里,我们开发了一个新的在线数据库,提供了我们的方法所鉴定的磷酸化信号以及文献中以前报道的磷酸化信号的信息。“KANPHOS”(激酶相关神经磷酸化信号)数据库及其网络门户是基于下一代 XooNIps 神经信息学工具构建的。为了探索 KANPHOS 数据库的功能,我们获得了腺苷 A2A 受体信号及其在纹状体/伏隔核中的下游 MAPK 介导信号的磷酸蛋白质组学数据,将其注册到 KANPHOS 中,并分析了相关途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/310e/8750479/4c1355d2fdbb/cells-11-00047-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/310e/8750479/e0a59fb4f82f/cells-11-00047-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/310e/8750479/0afa2c94cd46/cells-11-00047-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/310e/8750479/9c1ad9b044de/cells-11-00047-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/310e/8750479/edf036d1c933/cells-11-00047-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/310e/8750479/57d5a5fb76dd/cells-11-00047-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/310e/8750479/9ecac1318191/cells-11-00047-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/310e/8750479/4c1355d2fdbb/cells-11-00047-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/310e/8750479/e0a59fb4f82f/cells-11-00047-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/310e/8750479/0afa2c94cd46/cells-11-00047-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/310e/8750479/9c1ad9b044de/cells-11-00047-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/310e/8750479/edf036d1c933/cells-11-00047-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/310e/8750479/57d5a5fb76dd/cells-11-00047-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/310e/8750479/9ecac1318191/cells-11-00047-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/310e/8750479/4c1355d2fdbb/cells-11-00047-g007.jpg

相似文献

[1]
KANPHOS: A Database of Kinase-Associated Neural Protein Phosphorylation in the Brain.

Cells. 2021-12-24

[2]
In Vivo Identification of Protein Kinase Substrates by Kinase-Oriented Substrate Screening (KIOSS).

Curr Protoc Chem Biol. 2019-3

[3]
KANPHOS: Kinase-associated neural phospho-signaling database for data-driven research.

Front Mol Neurosci. 2024-4-2

[4]
Unraveling Kinase Activation Dynamics Using Kinase-Substrate Relationships from Temporal Large-Scale Phosphoproteomics Studies.

PLoS One. 2016-6-23

[5]
Phosphorylation Signals Downstream of Dopamine Receptors in Emotional Behaviors: Association with Preference and Avoidance.

Int J Mol Sci. 2022-10-1

[6]
Positive-unlabeled ensemble learning for kinase substrate prediction from dynamic phosphoproteomics data.

Bioinformatics. 2016-1-15

[7]
RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans.

Nucleic Acids Res. 2011-1

[8]
From Phosphosites to Kinases.

Methods Mol Biol. 2016

[9]
RegPhos 2.0: an updated resource to explore protein kinase-substrate phosphorylation networks in mammals.

Database (Oxford). 2014-4-25

[10]
Metabotropic mGlu5 receptors regulate adenosine A2A receptor signaling.

Proc Natl Acad Sci U S A. 2003-2-4

引用本文的文献

[1]
Multi-omics analysis of diabetic cardiomyopathy pathogenesis using a type 2 diabetic Zucker diabetic fatty rat model.

Sci Rep. 2025-7-2

[2]
KANPHOS: Kinase-associated neural phospho-signaling database for data-driven research.

Front Mol Neurosci. 2024-4-2

[3]
Neuromodulator regulation and emotions: insights from the crosstalk of cell signaling.

Front Mol Neurosci. 2024-3-7

[4]
Rho-Kinase/ROCK Phosphorylates PSD-93 Downstream of NMDARs to Orchestrate Synaptic Plasticity.

Int J Mol Sci. 2022-12-26

[5]
Pathophysiological Mechanism of Neurodevelopmental Disorders-Overview.

Cells. 2022-12-16

[6]
Phosphorylation Signals Downstream of Dopamine Receptors in Emotional Behaviors: Association with Preference and Avoidance.

Int J Mol Sci. 2022-10-1

[7]
Rho-Rho-Kinase Regulates Ras-ERK Signaling Through SynGAP1 for Dendritic Spine Morphology.

Neurochem Res. 2022-9

本文引用的文献

[1]
Accumbal D2R-medium spiny neurons regulate aversive behaviors through PKA-Rap1 pathway.

Neurochem Int. 2021-2

[2]
Advances in defining signaling networks for the establishment of neuronal polarity.

Curr Opin Cell Biol. 2020-2-1

[3]
The intellectual disability PAK3 R67C mutation impacts cognitive functions and adult hippocampal neurogenesis.

Hum Mol Genet. 2020-7-29

[4]
Protein kinases phosphorylate long disordered regions in intrinsically disordered proteins.

Protein Sci. 2019-11-28

[5]
In Vivo Identification of Protein Kinase Substrates by Kinase-Oriented Substrate Screening (KIOSS).

Curr Protoc Chem Biol. 2019-3

[6]
Balance between dopamine and adenosine signals regulates the PKA/Rap1 pathway in striatal medium spiny neurons.

Neurochem Int. 2018-10-15

[7]
The jPOST environment: an integrated proteomics data repository and database.

Nucleic Acids Res. 2019-1-8

[8]
Functionally Biased D2R Antagonists: Targeting the β-Arrestin Pathway to Improve Antipsychotic Treatment.

ACS Chem Biol. 2018-3-14

[9]
Discovery of long-range inhibitory signaling to ensure single axon formation.

Nat Commun. 2017-6-26

[10]
Spatial and temporal boundaries of NMDA receptor hypofunction leading to schizophrenia.

NPJ Schizophr. 2017-2-3

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索