• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

开发和鉴定法国特有植物独活属 Angelica heterocarpa(伞形科)及其同域共生近缘种的微卫星标记。

Development and characterization of microsatellite markers for the French endemic Angelica heterocarpa (Apiaceae) and congeneric sympatric species.

机构信息

University of Bordeaux, INRAE, BIOGECO, 33615, Pessac, France.

出版信息

BMC Res Notes. 2022 Jan 10;15(1):15. doi: 10.1186/s13104-021-05903-2.

DOI:10.1186/s13104-021-05903-2
PMID:35012643
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8751362/
Abstract

OBJECTIVE

Angelica heterocarpa (Apiaceae) is a wild endemic French species with special conservation interest in the European Union. It belongs to Angelica complex genus which is widespread throughout the north temperate zone, and is sympatric with other congeneric species. The objective of this work is to develop and characterize microsatellite markers as a new tool for understanding the ecology and evolution of Angelica species complex.

RESULTS

We identified simple sequence repeat (SSR) regions in a microsatellite-enriched library from A. heterocarpa and A. sylvestris. All 16 selected SSR regions were found to amplify in these species and were highly polymorphic. Marker transferability was validated in A. razulii and A. archangelica. These markers will help us to better understand the evolutionary dynamic between rare endemics and widespread sister species, and be useful for conservation of the endemic species. Moreover, they can provide new tools for studying the numerous traditional medicinal herbs of the Angelica genus.

摘要

目的

独活(伞形科)是一种法国特有野生植物,在欧盟具有特殊的保护意义。它属于广泛分布于北温带的独活属植物复合体,与其他同属种共存。本研究旨在开发和鉴定微卫星标记,作为研究独活属植物复合体生态和进化的新工具。

结果

我们从独活和野独活的微卫星富集文库中鉴定出简单序列重复(SSR)区域。在这两个物种中,所有 16 个选定的 SSR 区域都能扩增,并具有高度多态性。标记的可转移性在 Razulii 独活和 angelica 当归中得到了验证。这些标记将有助于我们更好地理解稀有特有种与广泛分布的姐妹种之间的进化动态,对特有种的保护也具有重要意义。此外,它们还可以为研究当归属的众多传统药用植物提供新的工具。

相似文献

1
Development and characterization of microsatellite markers for the French endemic Angelica heterocarpa (Apiaceae) and congeneric sympatric species.开发和鉴定法国特有植物独活属 Angelica heterocarpa(伞形科)及其同域共生近缘种的微卫星标记。
BMC Res Notes. 2022 Jan 10;15(1):15. doi: 10.1186/s13104-021-05903-2.
2
Development and characterization of 16 novel microsatellite markers by Transcriptome sequencing for Angelica dahurica and test for cross-species amplification.通过转录组测序开发和鉴定 16 个新的白芷微卫星标记,并进行跨物种扩增测试。
BMC Plant Biol. 2020 Apr 8;20(1):152. doi: 10.1186/s12870-020-02374-8.
3
E-microsatellite markers for Centella asiatica (Gotu Kola) genome: validation and cross-transferability in Apiaceae family for plant omics research and development.积雪草基因组的电子微卫星标记:在伞形科中的验证及交叉转移性,用于植物组学研究与开发
OMICS. 2015 Jan;19(1):52-65. doi: 10.1089/omi.2014.0113.
4
[Study on molecular evidence of revision of taxonomic placement of Peucedanum decursivum].[关于紫花前胡分类地位修订的分子证据研究]
Zhongguo Zhong Yao Za Zhi. 2006 Sep;31(18):1488-90.
5
Mining of simple sequence repeats (SSRs) loci and development of novel transferability-across EST-SSR markers from de novo transcriptome assembly of Angelica dahurica.从白芷从头转录组组装中挖掘简单重复序列(SSR)基因座和开发新型 EST-SSR 标记的跨转移能力。
PLoS One. 2019 Aug 22;14(8):e0221040. doi: 10.1371/journal.pone.0221040. eCollection 2019.
6
Limited genetic diversity and high differentiation in Angelica dahurica resulted from domestication: insights to breeding and conservation.有限的遗传多样性和高分化白芷驯化的结果:对繁殖和保护的见解。
BMC Plant Biol. 2022 Mar 24;22(1):141. doi: 10.1186/s12870-022-03545-5.
7
Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.胡萝卜微卫星分离与标记开发 - 基因组分布、连锁图谱构建、遗传多样性分析及伞形科间标记转移
BMC Genomics. 2011 Aug 1;12:386. doi: 10.1186/1471-2164-12-386.
8
The transferability of microsatellite loci from a homoploid to a polyploid hybrid complex: an example from fine-leaved species ().微卫星位点从同倍体到多倍体杂交复合体的可转移性:来自细叶物种的一个例子()。
PeerJ. 2020 Jun 1;8:e9227. doi: 10.7717/peerj.9227. eCollection 2020.
9
The characterisation of microsatellite markers reveals tetraploidy in the Greater Water Parsnip, Sium latifolium (Apiaceae).微卫星标记的特征分析揭示了宽叶水芹(Sium latifolium,伞形科)为四倍体。
BMC Res Notes. 2017 Jun 12;10(1):204. doi: 10.1186/s13104-017-2528-6.
10
Development and characterization of novel SSR markers in the endangered endemic species .濒危特有物种新型简单重复序列(SSR)标记的开发与特性分析
Appl Plant Sci. 2020 Feb 11;8(2):e11321. doi: 10.1002/aps3.11321. eCollection 2020 Feb.

引用本文的文献

1
Phylogenetic relationship and comparative analysis of the main Bupleuri Radix species in China.中国主要柴胡属植物的系统发育关系及比较分析。
PeerJ. 2023 Apr 14;11:e15157. doi: 10.7717/peerj.15157. eCollection 2023.

本文引用的文献

1
Development of Genome-Wide SSR Markers from Angelica gigas Nakai Using Next Generation Sequencing.利用下一代测序技术开发当归全基因组SSR标记
Genes (Basel). 2017 Sep 21;8(10):238. doi: 10.3390/genes8100238.
2
High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries.通过富集 DNA 文库的 454 GS-FLX Titanium 焦磷酸测序进行高通量微卫星分离。
Mol Ecol Resour. 2011 Jul;11(4):638-44. doi: 10.1111/j.1755-0998.2011.02992.x. Epub 2011 Feb 21.
3
QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects.QDD:一个用户友好的程序,用于从大型测序项目中选择微卫星标记和设计引物。
Bioinformatics. 2010 Feb 1;26(3):403-4. doi: 10.1093/bioinformatics/btp670. Epub 2009 Dec 10.
4
Natural medicine: the genus Angelica.天然药物:当归属
Curr Med Chem. 2004 Jun;11(11):1479-500. doi: 10.2174/0929867043365189.
5
An economic method for the fluorescent labeling of PCR fragments.一种用于PCR片段荧光标记的经济方法。
Nat Biotechnol. 2000 Feb;18(2):233-4. doi: 10.1038/72708.
6
Primer3 on the WWW for general users and for biologist programmers.万维网上面向普通用户和生物学家程序员的Primer3。
Methods Mol Biol. 2000;132:365-86. doi: 10.1385/1-59259-192-2:365.