Tissue Image Analytics Centre, Department of Computer Science, University of Warwick, UK.
Tissue Image Analytics Centre, Department of Computer Science, University of Warwick, UK.
Med Image Anal. 2022 Apr;77:102337. doi: 10.1016/j.media.2021.102337. Epub 2021 Dec 29.
Automated synthesis of histology images has several potential applications including the development of data-efficient deep learning algorithms. In the field of computational pathology, where histology images are large in size and visual context is crucial, synthesis of large high-resolution images via generative modeling is an important but challenging task due to memory and computational constraints. To address this challenge, we propose a novel framework called SAFRON (Stitching Across the FROntier Network) to construct realistic, large high-resolution tissue images conditioned on input tissue component masks. The main novelty in the framework is integration of stitching in its loss function which enables generation of images of arbitrarily large sizes after training on relatively small image patches while preserving morphological features with minimal boundary artifacts. We have used the proposed framework for generating, to the best of our knowledge, the largest-sized synthetic histology images to date (up to 11K×8K pixels). Compared to existing approaches, our framework is efficient in terms of the memory required for training and computations needed for synthesizing large high-resolution images. The quality of generated images was assessed quantitatively using Frechet Inception Distance as well as by 7 trained pathologists, who assigned a realism score to a set of images generated by SAFRON. The average realism score across all pathologists for synthetic images was as high as that of real images. We also show that training with additional synthetic data generated by SAFRON can significantly boost prediction performance of gland segmentation and cancer detection algorithms in colorectal cancer histology images.
自动化合成组织学图像在多个领域具有潜在的应用,包括开发数据高效的深度学习算法。在计算病理学领域,由于组织学图像尺寸较大且视觉上下文至关重要,因此通过生成式建模合成大尺寸高分辨率图像是一项重要但具有挑战性的任务,这主要是由于内存和计算的限制。为了解决这个挑战,我们提出了一种名为 SAFRON(Stitching Across the FROntier Network)的新框架,用于根据输入组织成分掩模构建逼真的、大尺寸高分辨率组织图像。该框架的主要新颖之处在于将拼接集成到其损失函数中,这使得在相对较小的图像补丁上进行训练后,可以生成任意大尺寸的图像,同时保留最小的边界伪影的形态特征。我们使用所提出的框架生成了迄今为止最大尺寸的合成组织学图像(高达 11K×8K 像素)。与现有方法相比,我们的框架在训练所需的内存和合成大尺寸高分辨率图像所需的计算方面具有效率优势。通过 Frechet Inception Distance 以及 7 位训练有素的病理学家对生成图像的质量进行了定量评估,病理学家为 SAFRON 生成的一组图像分配了一个逼真度评分。所有病理学家对合成图像的平均逼真度评分与真实图像一样高。我们还表明,使用 SAFRON 生成的额外合成数据进行训练可以显著提高结直肠癌组织学图像中腺体分割和癌症检测算法的预测性能。