Zou Sheng, Ye Jiayue, Hu Sheng, Wei Yiping, Xu Jianjun
Department of Cardiothoracic Surgery, the Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi Province, 330006, People's Republic of China.
Int J Gen Med. 2022 Jan 4;15:19-31. doi: 10.2147/IJGM.S343259. eCollection 2022.
To analyze the relationship between titin () mutation gene and tumor mutational burden (TMB) and the with prognosis of lung squamous cell carcinomas (LUSC), and to explore the feasibility of as a potential prognostic marker of for LUSC.
We analyzed the somatic mutation landscape of LUSC samples using datasets obtained from The Cancer Genome Atlas (TCGA) and International Cancer Genome Consortium (ICGC) databases. Sequence data were divided into wild and mutant groups, and differences in TMB values between the groups compared using a Mann-Whitney -test. The Kaplan Meier method was used to analyze the correlation between mutation and LUSC prognosis, whereas CIBERSORT algorithm was used to calculate the degree of relative enrichment degree of among tumor-infiltrating lymphocytes in LUSC.
Analysis of both datasets revealed high mutations in the gene, with mutants exhibiting a significantly higher TMB value relative to the wild-type (P < 0.001). Prognosis of the TTN mutant group in LUSC was significantly better than that of wild-type (P = 0.009). Kaplan Meier curves showed that TTN mutation may be an independent prognostic factor in LUSC patients (HR: 0.64, 95% CI 0.48-0.85, P = 0.001), while GSEA analysis revealed that TTN mutation plays a potential role in the development of LUSC. Finally, analysis of LUSC immune microenvironment revealed that mutation was significantly associated with enrichment of macrophages M1 (p < 0.05).
mutation is associated with TMB, and is positively correlated with prognosis of LUSC. Therefore, this mutation may serve as a potential prognostic indicator of LUSC.
分析肌联蛋白()突变基因与肿瘤突变负荷(TMB)之间的关系及其与肺鳞状细胞癌(LUSC)预后的关系,并探讨其作为LUSC潜在预后标志物的可行性。
我们使用从癌症基因组图谱(TCGA)和国际癌症基因组联盟(ICGC)数据库获得的数据集分析LUSC样本的体细胞突变图谱。序列数据分为野生型和突变型组,使用Mann-Whitney -检验比较两组之间的TMB值差异。采用Kaplan-Meier方法分析突变与LUSC预后的相关性,而CIBERSORT算法用于计算LUSC肿瘤浸润淋巴细胞中相对富集程度。
对两个数据集的分析均显示基因存在高突变,突变体的TMB值相对于野生型显著更高(P < 0.001)。LUSC中TTN突变组的预后明显优于野生型(P = 0.009)。Kaplan-Meier曲线显示TTN突变可能是LUSC患者的独立预后因素(HR:0.64,95% CI 0.48 - 0.85,P = 0.001),而GSEA分析显示TTN突变在LUSC的发生发展中起潜在作用。最后,对LUSC免疫微环境的分析显示突变与M1巨噬细胞的富集显著相关(p < 0.05)。
突变与TMB相关,且与LUSC的预后呈正相关。因此,这种突变可能作为LUSC的潜在预后指标。