Bioinformatics Centre, Savitribai Phule Pune University, Pune, India.
CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India.
Adv Protein Chem Struct Biol. 2022;128:361-396. doi: 10.1016/bs.apcsb.2021.08.002. Epub 2021 Oct 13.
G protein-coupled receptors (GPCRs) are membrane proteins that play a central role in cell signaling and constitute one of the largest classes of drug targets. The molecular mechanisms underlying GPCR function have been characterized by several experimental and computational methods and provide an understanding of their role in physiology and disease. Population variants arising from nsSNPs affect the native function of GPCRs and have been implicated in differential drug response. In this chapter, we provide an overview on GPCR structure and activation, with a special focus on the β-adrenergic receptor (β-AR). First, we discuss the current understanding of the structural and dynamic features of the wildtype receptor. Subsequently, the population variants identified in this receptor from clinical and large-scale genomic studies are described. We show how computational approaches such as bioinformatics tools and molecular dynamics simulations can be used to characterize the variant receptors in comparison to the wildtype receptor. In particular, we discuss three examples of clinically important variants and discuss how the structure and function of these variants differ from the wildtype receptor at a molecular level. Overall, the chapter provides an overview of structure and function of GPCR variants and is a step towards the study of inter-individual differences and personalized medicine.
G 蛋白偶联受体(GPCRs)是一种膜蛋白,在细胞信号转导中起着核心作用,是最大的药物靶点之一。GPCR 功能的分子机制已经通过几种实验和计算方法得到了描述,这些方法提供了对其在生理和疾病中的作用的理解。来自 nsSNP 的群体变异会影响 GPCR 的天然功能,并与药物反应的差异有关。在本章中,我们提供了 GPCR 结构和激活的概述,特别关注β-肾上腺素能受体(β-AR)。首先,我们讨论了对野生型受体的结构和动态特征的当前理解。随后,描述了从临床和大规模基因组研究中鉴定出的该受体中的群体变异。我们展示了如何使用计算方法,如生物信息学工具和分子动力学模拟,来对变异受体进行特征描述,并与野生型受体进行比较。特别是,我们讨论了三个具有临床重要性的变体的例子,并讨论了这些变体在分子水平上与野生型受体的结构和功能有何不同。总体而言,本章提供了对 GPCR 变体的结构和功能的概述,是研究个体间差异和个体化医学的一步。