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利用长读测序获得精确的基因模型揭示了. 中独特的 poly(A) 信号。

Precise gene models using long-read sequencing reveal a unique poly(A) signal in .

机构信息

Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, Colorado 80045, USA.

RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, Colorado 80045, USA.

出版信息

RNA. 2022 May;28(5):668-682. doi: 10.1261/rna.078793.121. Epub 2022 Feb 2.

Abstract

During pre-mRNA processing, the poly(A) signal is recognized by a protein complex that ensures precise cleavage and polyadenylation of the nascent transcript. The location of this cleavage event establishes the length and sequence of the 3' UTR of an mRNA, thus determining much of its post-transcriptional fate. Using long-read sequencing, we characterize the polyadenylation signal and related sequences surrounding cleavage sites for over 2600 genes. We find that uses an AGURAA poly(A) signal, which differs from the mammalian AAUAAA. We also describe how lacks common auxiliary elements found in other eukaryotes, along with the proteins that recognize them. Further, we identify 133 genes with evidence of alternative polyadenylation. These results suggest that despite pared-down cleavage and polyadenylation machinery, 3' end formation still appears to be an important regulatory step for gene expression in .

摘要

在 pre-mRNA 加工过程中,多聚(A)信号被一个蛋白质复合物识别,该复合物确保新生转录本的精确切割和多聚腺苷酸化。这个切割事件的位置决定了 mRNA 的 3'UTR 的长度和序列,从而决定了其大部分转录后命运。我们使用长读测序技术,对 2600 多个基因的切割位点周围的多聚腺苷酸化信号和相关序列进行了表征。我们发现 使用 AGURAA 多聚(A)信号,与哺乳动物的 AAUAAA 不同。我们还描述了 如何缺乏其他真核生物中常见的辅助元件以及识别它们的蛋白质。此外,我们还鉴定了 133 个具有可变多聚腺苷酸化证据的基因。这些结果表明,尽管切割和多聚腺苷酸化机制简化,但 3' 端形成似乎仍然是 基因表达的一个重要调控步骤。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b29c/9014877/10fbae4b544e/668f01.jpg

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