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脑模拟作为一种云服务:EBRAINS 上的虚拟大脑。

Brain simulation as a cloud service: The Virtual Brain on EBRAINS.

机构信息

Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany; Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Department of Neurology with Experimental Neurology, Charitéplatz 1, 10117 Berlin, Germany; Bernstein Focus State Dependencies of Learning & Bernstein Center for Computational Neuroscience Berlin, Germany; Einstein Center for Neuroscience Berlin, Charitéplatz 1, 10117 Berlin, Germany; Einstein Center Digital Future, Wilhelmstraße 67, 10117 Berlin, Germany.

Codemart, Str. Petofi Sandor, Cluj, Napoca, Romania.

出版信息

Neuroimage. 2022 May 1;251:118973. doi: 10.1016/j.neuroimage.2022.118973. Epub 2022 Feb 4.

Abstract

The Virtual Brain (TVB) is now available as open-source services on the cloud research platform EBRAINS (ebrains.eu). It offers software for constructing, simulating and analysing brain network models including the TVB simulator; magnetic resonance imaging (MRI) processing pipelines to extract structural and functional brain networks; combined simulation of large-scale brain networks with small-scale spiking networks; automatic conversion of user-specified model equations into fast simulation code; simulation-ready brain models of patients and healthy volunteers; Bayesian parameter optimization in epilepsy patient models; data and software for mouse brain simulation; and extensive educational material. TVB cloud services facilitate reproducible online collaboration and discovery of data assets, models, and software embedded in scalable and secure workflows, a precondition for research on large cohort data sets, better generalizability, and clinical translation.

摘要

《虚拟大脑》(TVB)现已作为开源服务在 EBRAINS 云研究平台上提供(ebrains.eu)。它提供了构建、模拟和分析脑网络模型的软件,包括 TVB 模拟器;用于提取结构和功能脑网络的磁共振成像(MRI)处理管道;大规模脑网络与小规模尖峰网络的联合模拟;将用户指定的模型方程自动转换为快速模拟代码;患者和健康志愿者的模拟就绪脑模型;癫痫患者模型中的贝叶斯参数优化;鼠标脑模拟的数据和软件;以及广泛的教育材料。TVB 云服务促进了可重复的在线协作和发现数据资产、模型和软件,这些都嵌入在可扩展和安全的工作流程中,这是对大型队列数据集进行研究、提高通用性和临床转化的前提。

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