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银屑病关键生物标志物和信号通路的综合生物信息学分析

Integrated bioinformatic analysis of key biomarkers and signalling pathways in psoriasis.

作者信息

Tang Suwei, Jiang Wencheng, Xu Ping, Xie Shaoqiong, Wang Mingxia, Gao Chunjie, Lu Jiajing, Yang Yang

机构信息

Department of Dermatology, Shanghai Skin Disease Hospital, School of medicine, Tongji University, Shanghai, China.

Institute of Psoriasis, School of medicine, Tongji University, Shanghai, China.

出版信息

Scott Med J. 2022 Feb;67(1):7-17. doi: 10.1177/00369330221078993. Epub 2022 Feb 11.

Abstract

BACKGROUND AND AIMS

Psoriasis is a relatively common autoimmune inflammatory skin disease with a chronic etiology. Since psoriasis is still incurable, it is necessary to identify the molecular mechanisms of psoriasis. The present study was designed to detect novel biomarkers and pathways associated with psoriasis incidence, and provide new insights into treatment of psoriasis.

METHODS AND RESULTS

Differentially expressed genes (DEGs) associated with psoriasis in the Gene Expression Omnibus (GEO) database were identified, and their functional roles and interactions were then annotated and evaluated through GO, KEGG, and gene set variation (GSVA) analyses. In total 197 psoriasis-related DEGs were identified and found to primarily be associated with the NOD-like receptor, IL-17, and cytokine-cytokine receptor interaction signalling pathways. GSVA revealed significant differences between normal and lesional groups (P < 0.05), while PPI network analyses identified CXCL10 as the hub gene with the highest degree value, whereas IRF7, IFIT3, OAS1, GBP1, and ISG15 were promising candidate genes for the therapeutic treatment of psoriasis.

CONCLUSION

The findings of the present integrated bioinformatics may enhance our understanding of the molecular events occurring in psoriasis, and these candidate genes and pathways together may prove to be therapeutic targets for psoriasis.

摘要

背景与目的

银屑病是一种病因不明的慢性自身免疫性炎症性皮肤病。由于银屑病仍无法治愈,因此有必要确定其分子机制。本研究旨在检测与银屑病发病相关的新生物标志物和信号通路,为银屑病的治疗提供新的见解。

方法与结果

在基因表达综合数据库(GEO)中鉴定出与银屑病相关的差异表达基因(DEG),然后通过基因本体论(GO)、京都基因与基因组百科全书(KEGG)和基因集变异分析(GSVA)对其功能作用和相互作用进行注释和评估。共鉴定出197个与银屑病相关的DEG,发现它们主要与NOD样受体、白细胞介素-17以及细胞因子-细胞因子受体相互作用信号通路有关。GSVA显示正常组和病变组之间存在显著差异(P<0.05),而蛋白质-蛋白质相互作用(PPI)网络分析确定CXCL10为度数最高的枢纽基因,而干扰素调节因子7(IRF7)、干扰素诱导蛋白3(IFIT3)、2'-5'-寡腺苷酸合成酶1(OAS1)、鸟苷结合蛋白1(GBP1)和干扰素刺激基因15(ISG15)是银屑病治疗的有前景的候选基因。

结论

本综合生物信息学研究结果可能会增强我们对银屑病中发生的分子事件的理解,这些候选基因和信号通路可能共同成为银屑病的治疗靶点。

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