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转录组学描绘轻度和重度寻常型银屑病的核心基因和通路景观。

Transcriptomic landscaping of core genes and pathways of mild and severe psoriasis vulgaris.

机构信息

Department of Molecular and Cellular Engineering, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj (Allahabad), Uttar Pradesh 211007, India.

Amity Institute of Biotechnology, Amity University, Noida Uttar Pradesh 201313, India.

出版信息

Int J Mol Med. 2021 Jan;47(1):219-231. doi: 10.3892/ijmm.2020.4771. Epub 2020 Oct 27.

Abstract

Psoriasis is a common chronic inflammatory skin disease affecting >125 million individuals worldwide. The therapeutic course for the disease is generally designed upon the severity of the disease. In the present study, the gene expression profile GSE78097, was retrieved from the National Centre of Biotechnology (NCBI)‑Gene Expression Omnibus (GEO) database to explore the differentially expressed genes (DEGs) in mild and severe psoriasis using the Affy package in R software. The Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathways of the DEGs were analysed using clusterProfiler, Bioconductor, version 3.8. In addition, the STRING database was used to develop DEG‑encoded proteins and a protein‑protein interaction network (PPI). Cytoscape software, version 3.7.1 was utilized to construct a protein interaction association network and analyse the interaction of the candidate DEGs encoding proteins in psoriasis. The top 2 hub genes in Cytohubba plugin parameters were validated using immunohistochemical analysis in psoriasis tissues. A total of 382 and 3,001 dysregulated mild and severe psoriasis DEGs were reported, respectively. The dysregulated mild psoriasis genes were enriched in pathways involving cytokine‑cytokine receptor interaction and rheumatoid arthritis, whereas cytokine‑cytokine receptor interaction, cell cycle and cell adhesion molecules were the most enriched pathways in severe psoriasis group. PL1N1, TLR4, ADIPOQ, CXCL8, PDK4, CXCL1, CXCL5, LPL, AGT, LEP were hub genes in mild psoriasis, whereas BUB1, CCNB1, CCNA2, CDK1, CDH1, VEGFA, PLK1, CDC42, CCND1 and CXCL8 were reported hub genes in severe psoriasis. Among these, CDC42, for the first time (to the best of our knowledge), has been reported in the psoriasis transcriptome, with its involvement in the adaptive immune pathway. Furthermore, the immunoexpression of CDK1 and CDH1 proteins in psoriasis skin lesions were demonstrated using immunohistochemical analysis. On the whole, the findings of the present integrated bioinformatics and immunohistochemical study, may enhance our understanding of the molecular events occurring in psoriasis, and these candidate genes and pathways together may prove to be therapeutic targets for psoriasis vulgaris.

摘要

银屑病是一种常见的慢性炎症性皮肤病,影响全球超过 1.25 亿人。疾病的治疗过程通常根据疾病的严重程度来设计。在本研究中,从美国国立生物技术信息中心(NCBI)基因表达综合数据库(GEO)中检索到基因表达谱 GSE78097,使用 R 软件中的 Affy 包探讨轻度和重度银屑病中的差异表达基因(DEGs)。使用 clusterProfiler、Bioconductor 版本 3.8 分析 DEGs 的京都基因与基因组百科全书(KEGG)途径。此外,使用 STRING 数据库构建 DEG 编码蛋白的蛋白质-蛋白质相互作用网络(PPI)。Cytoscape 软件,版本 3.7.1 用于构建蛋白质相互作用关联网络,并分析银屑病中候选 DEG 编码蛋白的相互作用。在 Cytohubba 插件参数中,使用免疫组织化学分析验证了前 2 个枢纽基因。报告了分别有 382 个和 3001 个失调的轻度和重度银屑病 DEGs。失调的轻度银屑病基因富集在涉及细胞因子-细胞因子受体相互作用和类风湿关节炎的途径中,而细胞因子-细胞因子受体相互作用、细胞周期和细胞黏附分子是重度银屑病组中最富集的途径。PL1N1、TLR4、ADIPOQ、CXCL8、PDK4、CXCL1、CXCL5、LPL、AGT、LEP 是轻度银屑病的枢纽基因,而 BUB1、CCNB1、CCNA2、CDK1、CDH1、VEGFA、PLK1、CDC42、CCND1 和 CXCL8 是重度银屑病的枢纽基因。其中,CDC42 是首次(据我们所知)在银屑病转录组中报道的,其参与适应性免疫途径。此外,使用免疫组织化学分析证实了 CDK1 和 CDH1 蛋白在银屑病皮损中的免疫表达。总的来说,本综合生物信息学和免疫组织化学研究的结果可能会增强我们对银屑病发生的分子事件的理解,这些候选基因和途径一起可能成为治疗寻常型银屑病的靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c70d/7723513/cea3f38de560/IJMM-47-01-0219-g00.jpg

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