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游离DNA的生物信息学分析方法

Bioinformatics analysis methods for cell-free DNA.

作者信息

Chen Yaojia, Gong Yuxin, Dou Lijun, Zhou Xun, Zhang Ying

机构信息

Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China, Quzhou, China.

Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China, Quzhou, China; School of Mathematics and Statistics, Hainan Normal University, Haikou, China.

出版信息

Comput Biol Med. 2022 Apr;143:105283. doi: 10.1016/j.compbiomed.2022.105283. Epub 2022 Feb 3.

DOI:10.1016/j.compbiomed.2022.105283
PMID:35149459
Abstract

As a kind of novel non-invasive marker for molecular detection, cell-free DNA (cfDNA) has potential value for the early diagnosis of diseases, prognosis assessment, and efficacy monitoring. The constant developments in molecular biology detection technologies have led to an increase in clinical studies on the use of cfDNA detection methods for patients, and many gratifying outcomes have been achieved. In this review, the contributions of bioinformatics tools to the study of cfDNA are well discussed. The focus of the review is on cfDNA identification signals, cfDNA identification methods, and the relationship of cfDNA with human diseases such as hepatic cancer, lung cancer, end-stage kidney disease, and ischemic stroke. The research significance and existing problems of using cfDNA as a biomarker for diseases are also discussed.

摘要

作为一种用于分子检测的新型非侵入性标志物,游离DNA(cfDNA)在疾病的早期诊断、预后评估和疗效监测方面具有潜在价值。分子生物学检测技术的不断发展使得针对患者使用cfDNA检测方法的临床研究不断增加,并取得了许多令人满意的成果。在这篇综述中,对生物信息学工具在cfDNA研究中的贡献进行了充分讨论。该综述的重点在于cfDNA识别信号、cfDNA识别方法以及cfDNA与肝癌、肺癌、终末期肾病和缺血性中风等人类疾病的关系。还讨论了将cfDNA用作疾病生物标志物的研究意义和存在的问题。

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1
Bioinformatics analysis methods for cell-free DNA.游离DNA的生物信息学分析方法
Comput Biol Med. 2022 Apr;143:105283. doi: 10.1016/j.compbiomed.2022.105283. Epub 2022 Feb 3.
2
A new approach to epigenome-wide discovery of non-invasive methylation biomarkers for colorectal cancer screening in circulating cell-free DNA using pooled samples.一种新方法,通过对汇集样本中的循环无细胞游离 DNA 进行全基因组范围内的表观遗传组学发现,以开发用于结直肠癌筛查的非侵入性甲基化生物标志物。
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Genome-wide discovery and validation of diagnostic DNA methylation-based biomarkers for hepatocellular cancer detection in circulating cell free DNA.利用循环游离 DNA 进行基于全基因组发现和验证诊断 DNA 甲基化的肝细胞癌检测的生物标志物
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Identifying the tissues-of-origin of circulating cell-free DNAs is a promising way in noninvasive diagnostics.鉴定循环游离 DNA 的组织来源是非侵入性诊断的一种很有前途的方法。
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Cell-free DNA: the role in pathophysiology and as a biomarker in kidney diseases.无细胞游离 DNA:在肾脏病的病理生理学和生物标志物中的作用。
Expert Rev Mol Med. 2018 Jan 18;20:e1. doi: 10.1017/erm.2017.12.

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