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肺腺癌中外切核酸酶 1 基因的生物信息学分析及实验研究。

Bioinformatics Analysis and Experimental Study of Exonuclease 1 Gene in Lung Adenocarcinoma.

机构信息

Department of Radiology, Zhongnan Hospital of Wuhan University, No.169 Donghu Road, Wuchang District, Wuhan, 430071, Hubei, China.

出版信息

Biochem Genet. 2022 Dec;60(6):1934-1945. doi: 10.1007/s10528-022-10190-y. Epub 2022 Feb 15.


DOI:10.1007/s10528-022-10190-y
PMID:35169964
Abstract

The objective of this study is to examine the role of Human Exonuclease 1(EXO1) gene in the diagnosis and prognosis of lung adenocarcinoma (LUAD), and predict the signal pathways EXO1 involved in. The clinical parameters and EXO1 expression datasets of LUAD patients were obtained from The Cancer Genome Atlas (TCGA), Oncomine and Gene Expression Omnibus (GEO) database. Wilcoxon rank-sum test was performed to determine whether EXO1 expression was upregulated in LUAD. The correlation between EXO1 expression and clinicopathological parameters was analyzed by Chi-square test, and Kaplan-Meier survival analysis and COX regression models were adopted to analyze and verify the correlation of EXO1 expression with OS of LUAD patients for the exploration of prognostic value of EXO1 in LUAD patients. The signaling pathway related to EXO1 was predicted by gene set enrichment analysis (GSEA). In addition, sera from LUAD patients and healthy subjects were collected, and real-time fluorescence quantitative polymerase chain reaction (RT-qPCR) was conducted to detect EXO1 expression. EXO1 expression was upregulated in LUAD patients with respect to normal individuals. EXO1 expression was negatively correlated with the prognosis and thus could independently predict the prognosis of LUAD patients. EXO1 gene was involved in 128 signal pathways, of which 9 pathways may be closely related. EXO1 was highly expressed in the blood of LUAD patients. High EXO1 expression can serve as an independent risk factor for poor prognosis, and the expression of serum EXO1 has certain diagnostic value for LUAD.

摘要

本研究旨在探讨人核酸外切酶 1(EXO1)基因在肺腺癌(LUAD)诊断和预后中的作用,并预测 EXO1 涉及的信号通路。从癌症基因组图谱(TCGA)、Oncomine 和基因表达综合数据库(GEO)中获取 LUAD 患者的临床参数和 EXO1 表达数据集。采用 Wilcoxon 秩和检验确定 LUAD 中 EXO1 表达是否上调。采用卡方检验分析 EXO1 表达与临床病理参数的相关性,采用 Kaplan-Meier 生存分析和 COX 回归模型分析和验证 EXO1 表达与 LUAD 患者 OS 的相关性,以探讨 EXO1 在 LUAD 患者中的预后价值。采用基因集富集分析(GSEA)预测与 EXO1 相关的信号通路。此外,收集 LUAD 患者和健康受试者的血清,采用实时荧光定量聚合酶链反应(RT-qPCR)检测 EXO1 表达。EXO1 在 LUAD 患者中表达上调。EXO1 表达与预后呈负相关,因此可以独立预测 LUAD 患者的预后。EXO1 基因参与 128 条信号通路,其中 9 条通路可能密切相关。EXO1 在 LUAD 患者的血液中高表达。高 EXO1 表达可作为预后不良的独立危险因素,血清 EXO1 的表达对 LUAD 具有一定的诊断价值。

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