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结核分枝杆菌的溶酶体表达基因 rv0428c 具有乙酰转移酶活性,并在应激条件下发挥保护作用。

A Phagosomally Expressed Gene, rv0428c, of Mycobacterium tuberculosis Demonstrates Acetyl Transferase Activity and Plays a Protective Role Under Stress Conditions.

机构信息

Department of Biotechnology, Panjab University, BMS Block-1, South Campus, Chandigarh, 160014, India.

COVID-19 Testing Facility, CSIR-IHBT, Palampur, 176061, India.

出版信息

Protein J. 2022 Apr;41(2):260-273. doi: 10.1007/s10930-022-10044-x. Epub 2022 Feb 17.

DOI:10.1007/s10930-022-10044-x
PMID:35175508
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8853125/
Abstract

Mycobacterium tuberculosis genome is composed of several hypothetical gene products that need to be characterized for understanding the physiology of bacteria. Rv0428c was one of the 11 proteins exclusively identified within the phagosomal compartment of macrophages infected with mycobacteria and marked as hypothetical. The expression of rv0428c gene was upregulated under acidic and nutritive stress conditions in M. tuberculosis H37Ra, which was supported by potential sigma factor binding sites in the region upstream to the rv0428c gene. The bioinformatics analysis predicted it to be a GCN5- acetyl transferase, belonging to the Histone acetyl transferase (HAT) family. The docking analysis predicted formation of hydrogen bonds and hydrophobic interactions between donor acetyl-co-A and histone H3 tail region. rv0428c gene was cloned and expressed in E. coli. The protein was purified to homogeneity and was fairly stable over a wide range of pH 5.0-9.0 and temperature up to 40 °C. The HAT activity of purified Rv0428c was confirmed by in vitro acetylation assay using recombinant H3 histone expressed in bacteria as substrate, which increased in time dependent manner. The results suggested that it is the second confirmed acetyl transferase in M. tuberculosis H37Rv. Furthermore, rv0428c was over expressed in surrogate host M. smegmatis, which led to enhanced growth rate and altered colony morphology. The expression of rv0428c in M. smegmatis promoted the survival of bacteria under acidic and nutritive stress conditions. In conclusion, Rv0428c, a phagosomal acetyl transferase of M. tuberculosis, might be involved in survival under stress conditions.

摘要

结核分枝杆菌基因组由几个假定的基因产物组成,需要对其进行特征分析,以了解细菌的生理学。Rv0428c 是在感染分枝杆菌的巨噬细胞吞噬体中唯一鉴定的 11 种蛋白之一,被标记为假定蛋白。rv0428c 基因的表达在结核分枝杆菌 H37Ra 的酸性和营养应激条件下上调,这得到了 rv0428c 基因上游区域潜在 sigma 因子结合位点的支持。生物信息学分析预测它是一种 GCN5-乙酰转移酶,属于组蛋白乙酰转移酶(HAT)家族。对接分析预测供体乙酰辅酶 A 和组蛋白 H3 尾部区域之间形成氢键和疏水相互作用。rv0428c 基因在大肠杆菌中克隆和表达。该蛋白被纯化至均一性,在 pH5.0-9.0 和温度高达 40°C 的较宽范围内相当稳定。使用在细菌中表达的重组 H3 组蛋白作为底物,通过体外乙酰化测定证实了纯化的 Rv0428c 的 HAT 活性,该活性呈时间依赖性增加。结果表明,它是结核分枝杆菌 H37Rv 中第二个被确认的乙酰转移酶。此外,rv0428c 在替代宿主 M. smegmatis 中过表达,导致生长速度加快和菌落形态改变。rv0428c 在 M. smegmatis 中的表达促进了细菌在酸性和营养应激条件下的存活。总之,结核分枝杆菌的吞噬体乙酰转移酶 Rv0428c 可能参与了应激条件下的存活。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0633/8853125/78f6c45d50ed/10930_2022_10044_Fig8_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0633/8853125/63177111db08/10930_2022_10044_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0633/8853125/78f6c45d50ed/10930_2022_10044_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0633/8853125/24490780be32/10930_2022_10044_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0633/8853125/7bbb11c251eb/10930_2022_10044_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0633/8853125/75a42219bd7f/10930_2022_10044_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0633/8853125/f03104323886/10930_2022_10044_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0633/8853125/c6862fae45f9/10930_2022_10044_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0633/8853125/8951a3dc79e9/10930_2022_10044_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0633/8853125/63177111db08/10930_2022_10044_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0633/8853125/78f6c45d50ed/10930_2022_10044_Fig8_HTML.jpg

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