von Ranke Natalia L, Castro Helena Carla, Rodrigues Carlos R
Laboratory of Molecular Modeling and QSAR (ModMolQSAR), Faculty of Pharmacy, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil.
Laboratory of Antibiotics, Biochemistry, Education and Molecular Modeling (LABiEMol), Biology Institute, Federal Fluminense University, Niteroi, Brazil.
J Mol Graph Model. 2022 Jun;113:108145. doi: 10.1016/j.jmgm.2022.108145. Epub 2022 Feb 10.
Cancer remains among the world's top devastating diseases, with millions of lives been affected each year. Conventional anticancer therapies are often far from ideal due to non-selective biodistribution. Therefore, the carbon nanotube (CNT) has been developed as a drug carrier for targeting specific cancer cells. In this work, we applied computer modeling approaches to investigate the interactions of single-wall carbon nanotube (SWCNT) with three different anticancer drugs: doxorubicin (DOX), Bendamustine (BEN), and Carmustine (CAR). Here we find physicochemical characteristics from the ligands that can contribute to a higher affinity towards the CNT, such as the presence of halogen substituents and the positively charged cation. On the other hand, the presence of anions groups, such as carboxylate, can decrease the interaction of the ligands and CNT. The binding free energy results indicate the SWCNT(15,15) with a diameter of 20.3 Å as the most favorable for encapsulating drugs ranging from 12 to 39 heavy atoms. The basic knowledge obtained from this study is expected to contribute to the molecular understanding of drug-loaded SWCNT for the development of a more efficiently anticancer drug carrier.
癌症仍然是世界上最具毁灭性的疾病之一,每年有数百万人的生命受到影响。由于非选择性的生物分布,传统的抗癌疗法往往远非理想。因此,碳纳米管(CNT)已被开发为一种靶向特定癌细胞的药物载体。在这项工作中,我们应用计算机建模方法研究了单壁碳纳米管(SWCNT)与三种不同抗癌药物:阿霉素(DOX)、苯达莫司汀(BEN)和卡莫司汀(CAR)之间的相互作用。在这里,我们发现配体的物理化学特性有助于提高对碳纳米管的亲和力,例如卤素取代基的存在和带正电荷的阳离子。另一方面,阴离子基团(如羧酸盐)的存在会降低配体与碳纳米管的相互作用。结合自由能结果表明,直径为20.3 Å的SWCNT(15,15)最有利于包裹12至39个重原子的药物。预计从这项研究中获得的基础知识将有助于从分子层面理解载药SWCNT,以开发更有效的抗癌药物载体。