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MOVER 近似 CV:一种用于定量比率式液滴数字 PCR 分析的精度的工具。

MOVER approximated CV: A tool for quantifying precision in ratiometric droplet digital PCR assays.

机构信息

Department of Epidemiology, Colorado School of Public Health, Aurora, CO, USA.

Rocky Mountain Regional VA Medical Center, Aurora, CO, USA; Division of Pulmonary Sciences and Critical Care Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.

出版信息

J Pharm Biomed Anal. 2022 Apr 1;212:114664. doi: 10.1016/j.jpba.2022.114664. Epub 2022 Feb 16.

Abstract

Droplet digital PCR is a particularly valuable tool for ratiometric assays because it provides simultaneous absolute quantification of two target sequences in a single assay. This manuscript addresses a challenge in establishing a new ratiometric droplet digital PCR assay for use in sputum, the rRNA synthesis ratio. In principle, the methods established to evaluate precision and determine the limit of quantification for a single measurand cannot be applied to a ratiometric assay. The precision of a ratio depends on precision in both the numerator and denominator. Here, we evaluated the MOVER approximated coefficient of variation as indicator of assay precision that does not require technical replicates. We estimated the MOVER approximated coefficient of variation in dilution series and routine assays and evaluated its agreement with the traditional coefficient of variation. We found that the MOVER approximated coefficient of variation was able to recapitulate the traditional coefficient of variation without the requirement for replicate assays. We also demonstrated that the MOVER approximated coefficient of variation threshold can be used to define the limit of quantification of the rRNA synthesis Ratio. In conclusion, the MOVER approximated coefficient of variation may be useful not only for the rRNA synthesis ratio but for other assays that measure ratios via droplet digital PCR.

摘要

微滴式数字 PCR 是一种特别有价值的工具,可用于比率分析,因为它可在单个分析中同时对两个靶序列进行绝对定量。本文针对在痰液中建立新的比率微滴式数字 PCR 分析方法(rRNA 合成比)所面临的挑战进行了研究。原则上,用于评估精密度和确定单个可测量物的定量下限的方法不能应用于比率分析。比率的精密度取决于分子和分母的精密度。在这里,我们评估了 MOVER 近似变异系数作为不需要技术重复的分析精密度的指标。我们在稀释系列和常规分析中评估了 MOVER 近似变异系数,并评估了其与传统变异系数的一致性。我们发现,MOVER 近似变异系数无需重复分析即可重现传统变异系数。我们还证明,MOVER 近似变异系数可以用于定义 rRNA 合成比的定量下限。总之,MOVER 近似变异系数不仅可用于 rRNA 合成比,还可用于通过微滴式数字 PCR 测量比率的其他分析。

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