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晶体成核的无监督拓扑学习方法

Unsupervised topological learning approach of crystal nucleation.

作者信息

Becker Sébastien, Devijver Emilie, Molinier Rémi, Jakse Noël

机构信息

Université Grenoble Alpes, CNRS, Grenoble INP, SIMaP, 38000, Grenoble, France.

Université Grenoble Alpes, CNRS, Grenoble INP, LIG, 38000, Grenoble, France.

出版信息

Sci Rep. 2022 Feb 24;12(1):3195. doi: 10.1038/s41598-022-06963-5.

DOI:10.1038/s41598-022-06963-5
PMID:35210485
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8873400/
Abstract

Nucleation phenomena commonly observed in our every day life are of fundamental, technological and societal importance in many areas, but some of their most intimate mechanisms remain however to be unravelled. Crystal nucleation, the early stages where the liquid-to-solid transition occurs upon undercooling, initiates at the atomic level on nanometre length and sub-picoseconds time scales and involves complex multidimensional mechanisms with local symmetry breaking that can hardly be observed experimentally in the very details. To reveal their structural features in simulations without a priori, an unsupervised learning approach founded on topological descriptors loaned from persistent homology concepts is proposed. Applied here to monatomic metals, it shows that both translational and orientational ordering always come into play simultaneously as a result of the strong bonding when homogeneous nucleation starts in regions with low five-fold symmetry. It also reveals the specificity of the nucleation pathways depending on the element considered, with features beyond the hypothesis of Classical Nucleation Theory.

摘要

成核现象在我们日常生活中普遍可见,在许多领域具有基础、技术和社会层面的重要性,但其中一些最隐秘的机制仍有待揭示。晶体成核是液体在过冷状态下发生液 - 固转变的早期阶段,它在纳米长度和亚皮秒时间尺度的原子层面上启动,涉及具有局部对称性破缺的复杂多维机制,其细节很难通过实验观察到。为了在无先验知识情况下通过模拟揭示它们的结构特征,我们提出了一种基于从持久同调概念借用的拓扑描述符的无监督学习方法。在此应用于单原子金属,结果表明,当在具有低五次对称性的区域开始均匀成核时,由于强键合作用,平移有序和取向有序总是同时发挥作用。它还揭示了取决于所考虑元素的成核途径的特异性,具有超出经典成核理论假设的特征。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a6f/8873400/51ddd2002f60/41598_2022_6963_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a6f/8873400/96b8727c2ff4/41598_2022_6963_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a6f/8873400/c19fbf7626e0/41598_2022_6963_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a6f/8873400/0dc8ad318c8e/41598_2022_6963_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a6f/8873400/3d5bca6af444/41598_2022_6963_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a6f/8873400/4f8d2638a27d/41598_2022_6963_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a6f/8873400/51ddd2002f60/41598_2022_6963_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a6f/8873400/96b8727c2ff4/41598_2022_6963_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a6f/8873400/c19fbf7626e0/41598_2022_6963_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a6f/8873400/0dc8ad318c8e/41598_2022_6963_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a6f/8873400/3d5bca6af444/41598_2022_6963_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a6f/8873400/4f8d2638a27d/41598_2022_6963_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a6f/8873400/51ddd2002f60/41598_2022_6963_Fig6_HTML.jpg

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本文引用的文献

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Autonomously revealing hidden local structures in supercooled liquids.自主揭示过冷液体中隐藏的局部结构。
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Medium-range order in amorphous ices revealed by persistent homology.持久同调揭示的非晶态冰中的中程有序。
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Observing crystal nucleation in four dimensions using atomic electron tomography.利用原子电子断层扫描技术在四维空间中观察晶体成核。
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Crystal nucleation as the ordering of multiple order parameters.晶体成核作为多个序参量的有序化。
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The early crystal nucleation process in hard spheres shows synchronised ordering and densification.硬球中早期的晶体成核过程表现出同步的有序化和致密化。
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