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心脏肥大中circRNA-miRNA-mRNA ceRNA网络的综合分析

Integrated Analysis of circRNA-miRNA-mRNA ceRNA Network in Cardiac Hypertrophy.

作者信息

Chen Yang-Hao, Zhong Ling-Feng, Hong Xia, Zhu Qian-Li, Wang Song-Jie, Han Ji-Bo, Huang Wei-Jian, Ye Bo-Zhi

机构信息

The Key Laboratory of Cardiovascular Disease of Wenzhou, Department of Cardiology, The First Affiliated Hospital of WenZhou Medical University, WenZhou, China.

Coronary Care Unit, The First Affiliated Hospital of Wenzhou Medical University, WenZhou, China.

出版信息

Front Genet. 2022 Feb 8;13:781676. doi: 10.3389/fgene.2022.781676. eCollection 2022.

Abstract

Cardiac hypertrophy is an adaptive cardiac response that accommodates the variable hemodynamic demands of the human body during extended periods of preload or afterload increase. In recent years, an increasing number of studies have pointed to a potential connection between myocardial hypertrophy and abnormal expression of non-coding RNAs. Circular RNA (circRNA), as one of the non-coding RNAs, plays an essential role in cardiac hypertrophy. However, few studies have systematically analyzed circRNA-related competing endogenous RNA (ceRNA) regulatory networks associated with cardiac hypertrophy. Therefore, we used public databases from online prediction websites to predict and screen differentially expressed mRNAs and miRNAs and ultimately obtained circRNAs related to cardiac hypertrophy. Based on this result, we went on to establish a circRNAs-related ceRNA regulatory network. This study is the first to establish a circRNA-mediated ceRNA regulatory network associated with myocardial hypertrophy. To verify the results of our analysis, we used PCR to verify the differentially expressed mRNAs and miRNAs in animal myocardial hypertrophy model samples. Our findings suggest that three mRNAs (Col12a1, Thbs1, and Tgfbr3), four miRNAs (miR-20a-5p, miR-27b-3p, miR-342-3p, and miR-378a-3p), and four related circRNAs (circ_0002702, circ_0110609, circ_0013751, and circ_0047959) may play a key role in cardiac hypertrophy.

摘要

心脏肥大是一种适应性心脏反应,可在长时间的前负荷或后负荷增加期间适应人体不断变化的血流动力学需求。近年来,越来越多的研究指出心肌肥大与非编码RNA的异常表达之间存在潜在联系。环状RNA(circRNA)作为非编码RNA之一,在心脏肥大中起着至关重要的作用。然而,很少有研究系统地分析与心脏肥大相关的环状RNA相关的竞争性内源RNA(ceRNA)调控网络。因此,我们利用在线预测网站的公共数据库来预测和筛选差异表达的mRNA和miRNA,最终获得了与心脏肥大相关的环状RNA。基于这一结果,我们继续建立了一个与环状RNA相关的ceRNA调控网络。本研究首次建立了与心肌肥大相关的环状RNA介导的ceRNA调控网络。为了验证我们的分析结果,我们使用PCR验证了动物心肌肥大模型样本中差异表达的mRNA和miRNA。我们的研究结果表明,三种mRNA(Col12a1、Thbs1和Tgfbr3)、四种miRNA(miR-20a-5p、miR-27b-3p、miR-342-3p和miR-378a-3p)以及四种相关的环状RNA(circ_0002702、circ_0110609、circ_0013751和circ_0047959)可能在心脏肥大中起关键作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbec/8860901/bfaf1873d9f8/fgene-13-781676-g001.jpg

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