Yang Deying, Xiao Feng, Li Jiamei, Wang Siqi, Fan Xiaolan, Ni Qingyong, Li Yan, Zhang Mingwang, Yan Taiming, Yang Mingyao, He Zhi
College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, China.
Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu, China.
Front Genet. 2023 Feb 28;14:1096902. doi: 10.3389/fgene.2023.1096902. eCollection 2023.
As is an extensively used genetic model system, understanding of its regulatory networks has great significance in revealing the genetic mechanisms of ageing and human diseases. Competing endogenous RNA (ceRNA)-mediated regulation is an important mechanism by which circular RNAs (circRNAs) and long non-coding RNAs (lncRNAs) regulate ageing and age-related diseases. However, extensive analyses of the multiomics (circRNA/miRNA/mRNA and lncRNA/miRNA/mRNA) characteristics of adult during ageing have not been reported. Here, differentially expressed circRNAs and microRNAs (miRNAs) between 7 and 42-day-old flies were screened and identified. Then, the differentially expressed mRNAs, circRNAs, miRNAs, and lncRNAs between the 7- and 42-day old flies were analysed to identify age-related circRNA/miRNA/mRNA and lncRNA/miRNA/mRNA networks in ageing . Several key ceRNA networks were identified, such as the dme_circ_0009500/dme_miR-289-5p/, dme_circ_0009500/dme_miR-289-5p/, dme_circ_0009500/dme_miR-985-3p/, and XLOC_027736/dme_miR-985-3p/ XLOC_189909/dme_miR-985-3p/ networks. Furthermore, real-time quantitative PCR (qPCR) was used to verify the expression level of those genes. Those results suggest that the discovery of these ceRNA networks in ageing adult provide new information for research on human ageing and age-related diseases.
由于果蝇是一种广泛使用的遗传模型系统,了解其调控网络对于揭示衰老和人类疾病的遗传机制具有重要意义。竞争性内源性RNA(ceRNA)介导的调控是环状RNA(circRNA)和长链非编码RNA(lncRNA)调节衰老及与年龄相关疾病的重要机制。然而,尚未见关于果蝇衰老过程中多组学(circRNA/miRNA/mRNA和lncRNA/miRNA/mRNA)特征的广泛分析报道。在此,我们筛选并鉴定了7日龄和42日龄果蝇之间差异表达的circRNA和微小RNA(miRNA)。然后,分析了7日龄和42日龄果蝇之间差异表达的mRNA、circRNA、miRNA和lncRNA,以确定果蝇衰老过程中与年龄相关的circRNA/miRNA/mRNA和lncRNA/miRNA/mRNA网络。鉴定出了几个关键的ceRNA网络,如dme_circ_0009500/dme_miR - 289 - 5p/、dme_circ_0009500/dme_miR - 289 - 5p/、dme_circ_0009500/dme_miR - 985 - 3p/以及XLOC_027736/dme_miR - 985 - 3p/XLOC_189909/dme_miR - 985 - 3p/网络。此外,使用实时定量PCR(qPCR)验证了这些基因的表达水平。这些结果表明,在衰老果蝇中发现这些ceRNA网络为人类衰老及与年龄相关疾病的研究提供了新信息。