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噻吩类——天然存在的植物代谢产物:其作为组织蛋白酶D抑制剂的生物活性及计算机模拟评估

Thiophenes-Naturally Occurring Plant Metabolites: Biological Activities and In Silico Evaluation of Their Potential as Cathepsin D Inhibitors.

作者信息

Ibrahim Sabrin R M, Omar Abdelsattar M, Bagalagel Alaa A, Diri Reem M, Noor Ahmad O, Almasri Diena M, Mohamed Shaimaa G A, Mohamed Gamal A

机构信息

Department of Chemistry, Preparatory Year Program, Batterjee Medical College, Jeddah 21442, Saudi Arabia.

Department of Pharmacognosy, Faculty of Pharmacy, Assiut University, Assiut 71526, Egypt.

出版信息

Plants (Basel). 2022 Feb 17;11(4):539. doi: 10.3390/plants11040539.

Abstract

Naturally, thiophenes represent a small family of natural metabolites featured by one to five thiophene rings. Numerous plant species belonging to the family Asteraceae commonly produce thiophenes. These metabolites possessed remarkable bioactivities, including antimicrobial, antiviral, anti-inflammatory, larvicidal, antioxidant, insecticidal, cytotoxic, and nematicidal properties. The current review provides an update over the past seven years for the reported natural thiophene derivatives, including their sources, biosynthesis, spectral data, and bioactivities since the last review published in 2015. Additionally, with the help of the SuperPred webserver, an AI (artificial intelligence) tool, the potential drug target for the compounds was predicted. In silico studies were conducted for Cathepsin D with thiophene derivatives, including ADMET (drug absorption/distribution/metabolism/excretion/and toxicity) properties prediction, molecular docking for the binding interaction, and molecular dynamics to evaluate the ligand-target interaction stability under simulated physiological conditions.

摘要

自然地,噻吩是一类由一到五个噻吩环构成的天然代谢产物小家族。许多属于菊科的植物物种通常会产生噻吩。这些代谢产物具有显著的生物活性,包括抗菌、抗病毒、抗炎、杀幼虫、抗氧化、杀虫、细胞毒性和杀线虫特性。本综述提供了过去七年中已报道的天然噻吩衍生物的最新情况,包括自2015年上次综述发表以来它们的来源、生物合成、光谱数据和生物活性。此外,借助人工智能工具SuperPred网络服务器,预测了这些化合物的潜在药物靶点。对组织蛋白酶D与噻吩衍生物进行了计算机模拟研究,包括药物吸收/分布/代谢/排泄/毒性(ADMET)特性预测、结合相互作用的分子对接以及分子动力学,以评估在模拟生理条件下配体-靶点相互作用的稳定性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a34a/8877444/3446ab936211/plants-11-00539-sch002.jpg

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