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一株新颖的淡水噬藻体,Mae-Yong924-1,揭示了一个新科。

A Novel Freshwater Cyanophage, Mae-Yong924-1, Reveals a New Family.

机构信息

School of Marine Sciences, Ningbo University, Ningbo 315211, China.

College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, China.

出版信息

Viruses. 2022 Jan 28;14(2):283. doi: 10.3390/v14020283.

Abstract

Cyanobacterial blooms are a worldwide ecological issue. Cyanophages are aquatic viruses specifically infecting cyanobacteria. Little is known about freshwater cyanophages. In this study, a freshwater cyanophage, Mae-Yong924-1, was isolated by the double-layer agar plate method using FACHB-924 as an indicator host. Mae-Yong924-1 has several unusual characteristics: a unique shape, cross-taxonomic order infectivity and a very unique genome sequence. Mae-Yong924-1 contains a nearly spherical head of about 100 nm in diameter. The tail or tail-like structure (approximately 40 nm in length) is like the tassel of a round Chinese lantern. It could lyse six diverse cyanobacteria strains across three orders including , and . The genome of the cyanophage is 40,325 bp in length, with a G + C content of 48.32%, and 59 predicted open reading frames (ORFs), only 12 (20%) of which were functionally annotated. Both BLASTn and BLASTx scanning resulted in "No significant similarity found", i.e., the Mae-Yong924-1 genome shared extremely low homology with sequences in NCBI databases. Mae-Yong924-1 formed a root node alone and monopolized a root branch in the proteomic tree based on genome-wide sequence similarities. The results suggest that Mae-Yong924-1 may reveal a new unknown family apparently distinct from other viruses.

摘要

蓝藻水华是一个全球性的生态问题。噬藻体是专门感染蓝藻的水生病毒。关于淡水噬藻体知之甚少。本研究采用双层琼脂平板法,以 FACHB-924 为指示宿主,分离到一株淡水噬藻体 Mae-Yong924-1。Mae-Yong924-1 具有几个不寻常的特征:独特的形态、跨分类阶的感染性和非常独特的基因组序列。Mae-Yong924-1 含有一个近球形头部,直径约 100nm。尾或尾状结构(约 40nm 长)类似于圆形灯笼的流苏。它可以裂解六个不同的蓝藻菌株,跨越三个门,包括 、和。该噬藻体的基因组长 40325bp,G+C 含量为 48.32%,预测有 59 个开放阅读框(ORFs),其中只有 12 个(20%)具有功能注释。BLASTn 和 BLASTx 扫描均显示“未发现显著相似性”,即 Mae-Yong924-1 基因组与 NCBI 数据库中的序列同源性极低。Mae-Yong924-1 在基于全基因组序列相似性的蛋白质组树上独自形成一个根节点,并垄断一个根分支。结果表明,Mae-Yong924-1 可能揭示了一个新的未知家族,显然与其他病毒明显不同。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/173f/8875630/4a84ffb52366/viruses-14-00283-g001.jpg

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