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肾透明细胞癌联合缺氧与免疫指数的构建及验证

Construction and Verification of a Combined Hypoxia and Immune Index for Clear Cell Renal Cell Carcinoma.

作者信息

Wang Bin, Liu Lixiao, Wu Jinting, Mao Xiaolu, Fang Zhen, Chen Yingyu, Li Wenfeng

机构信息

Department of Medical Oncology, the First Affiliated Hospital of Wenzhou Medical University, Wenzhou, China.

Department of Obstetrics and Gynecology, the First Affiliated Hospital of Wenzhou Medical University, Wenzhou, China.

出版信息

Front Genet. 2022 Feb 9;13:711142. doi: 10.3389/fgene.2022.711142. eCollection 2022.

Abstract

Clear cell renal cell carcinoma (ccRCC) is one of the most aggressive malignancies in humans. Hypoxia-related genes are now recognized as a reflection of poor prognosis in cancer patients with cancer. Meanwhile, immune-related genes play an important role in the occurrence and progression of ccRCC. Nevertheless, reliable prognostic indicators based on hypoxia and immune status have not been well established in ccRCC. The aims of this study were to develop a new gene signature model using bioinformatics and open databases and to validate its prognostic value in ccRCC. The data used for the model structure can be accessed from The Cancer Genome Atlas database. Univariate, least absolute shrinkage and selection operator (LASSO), and multivariate Cox regression analyses were used to identify the hypoxia- and immune-related genes associated with prognostic risk, which were used to develop a characteristic model of prognostic risk. Kaplan-Meier and receiver-operating characteristic curve analyses were performed as well as independent prognostic factor analyses and correlation analyses of clinical characteristics in both the training and validation cohorts. In addition, differences in tumor immune cell infiltrates were compared between the high and low risk groups. Overall, 30 hypoxia- and immune-related genes were identified, and five hypoxia- and immune-related genes (, , , , ) were ultimately selected. Survival analysis showed that the high-risk score on the hypoxia- and immune-related gene signature was significantly associated with adverse survival outcomes. Furthermore, clinical ccRCC samples from our medical center were used to validate the differential expression of the five genes in tumor tissue compared to normal tissue through quantitative real-time polymerase chain reaction (qRT-PCR). However, more clinical trials are needed to confirm these results, and future experimental studies must verify the potential mechanism behind the predictive value of the hypoxia- and immune-related gene signature.

摘要

透明细胞肾细胞癌(ccRCC)是人类最具侵袭性的恶性肿瘤之一。缺氧相关基因目前被认为是癌症患者预后不良的一个反映。同时,免疫相关基因在ccRCC的发生和发展中起重要作用。然而,基于缺氧和免疫状态的可靠预后指标在ccRCC中尚未得到很好的确立。本研究的目的是利用生物信息学和开放数据库开发一种新的基因特征模型,并验证其在ccRCC中的预后价值。用于模型构建的数据可从癌症基因组图谱数据库获取。采用单因素、最小绝对收缩和选择算子(LASSO)以及多因素Cox回归分析来识别与预后风险相关的缺氧和免疫相关基因,这些基因被用于构建预后风险特征模型。在训练队列和验证队列中进行了Kaplan-Meier分析和受试者工作特征曲线分析,以及独立预后因素分析和临床特征的相关性分析。此外,还比较了高风险组和低风险组之间肿瘤免疫细胞浸润的差异。总体而言,共鉴定出30个缺氧和免疫相关基因,最终选择了5个缺氧和免疫相关基因(,,,,)。生存分析表明,缺氧和免疫相关基因特征的高风险评分与不良生存结果显著相关。此外,我们医学中心的临床ccRCC样本通过定量实时聚合酶链反应(qRT-PCR)用于验证这5个基因在肿瘤组织与正常组织中的差异表达。然而,需要更多的临床试验来证实这些结果,未来的实验研究必须验证缺氧和免疫相关基因特征预测价值背后的潜在机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29c7/8863964/9ca020054537/fgene-13-711142-g001.jpg

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