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胶质母细胞瘤中焦亡衍生的长链非编码RNA特征的临床意义和免疫格局

Clinical Significance and Immune Landscape of a Pyroptosis-Derived LncRNA Signature for Glioblastoma.

作者信息

Xing Zhe, Liu Zaoqu, Fu Xudong, Zhou Shaolong, Liu Long, Dang Qin, Guo Chunguang, Ge Xiaoyong, Lu Taoyuan, Zheng Youyang, Dai Lirui, Han Xinwei, Wang Xinjun

机构信息

Department of Neurosurgery, The Fifth Affiliated Hospital of Zhengzhou University, Zhengzhou, China.

Henan International Joint Laboratory of Glioma Metabolism and Microenvironment Research, Zhengzhou, China.

出版信息

Front Cell Dev Biol. 2022 Feb 10;10:805291. doi: 10.3389/fcell.2022.805291. eCollection 2022.

DOI:10.3389/fcell.2022.805291
PMID:35223836
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8866949/
Abstract

Pyroptosis was recently implicated in the initiation and progression of tumors, including glioblastoma (GBM). This study aimed to explore the clinical significance of pyroptosis-related lncRNAs (PRLs) in GBM. Three independent cohorts were retrieved from the TCGA and CGGA databases. The consensus clustering and weighted gene coexpression network analysis (WGCNA) were applied to identify PRLs. The LASSO algorithm was employed to develop and validate a pyroptosis-related lncRNA signature (PRLS) in three independent cohorts. The molecular characteristics, clinical significances, tumor microenvironment, immune checkpoints profiles, and benefits of chemotherapy and immunotherapy regarding to PRLS were also explored. In the WGCNA framework, a key module that highly correlated with pyroptosis was extracted for identifying PRLs. Univariate Cox analysis further revealed the associations between PRLs and overall survival. Based on the expression profiles of PRLs, the PRLS was initially developed in TCGA cohort ( = 143) and then validated in two CGGA cohorts ( = 374). Multivariate Cox analysis demonstrated that our PRLS model was an independent risk factor. More importantly, this signature displayed a stable and accurate performance in predicting prognosis at 1, 3, and 5 years, with all AUCs above 0.7. The decision curve analysis also indicated that our signature had promising clinical application. In addition, patients with high PRLS score suggested a more abundant immune infiltration, higher expression of immune checkpoint genes, and better response to immunotherapy but worse to chemotherapy. A novel pyroptosis-related lncRNA signature with a robust performance was constructed and validated in multiple cohorts. This signature provided new perspectives for clinical management and precise treatments of GBM.

摘要

最近发现细胞焦亡与包括胶质母细胞瘤(GBM)在内的肿瘤的发生和发展有关。本研究旨在探讨细胞焦亡相关长链非编码RNA(PRLs)在GBM中的临床意义。从TCGA和CGGA数据库中检索了三个独立队列。应用共识聚类和加权基因共表达网络分析(WGCNA)来鉴定PRLs。采用LASSO算法在三个独立队列中开发并验证细胞焦亡相关长链非编码RNA特征(PRLS)。还探讨了PRLS的分子特征、临床意义、肿瘤微环境、免疫检查点谱以及化疗和免疫治疗的益处。在WGCNA框架中,提取了一个与细胞焦亡高度相关的关键模块来鉴定PRLs。单因素Cox分析进一步揭示了PRLs与总生存期之间的关联。基于PRLs的表达谱,最初在TCGA队列(n = 143)中开发了PRLS,然后在两个CGGA队列(n = 374)中进行了验证。多因素Cox分析表明,我们的PRLS模型是一个独立的危险因素。更重要的是,该特征在预测1年、3年和5年预后方面表现出稳定且准确的性能,所有AUC均高于0.7。决策曲线分析也表明我们的特征具有良好的临床应用前景。此外,PRLS评分高的患者提示免疫浸润更丰富、免疫检查点基因表达更高,对免疫治疗反应更好,但对化疗反应更差。构建了一个性能稳健的新型细胞焦亡相关长链非编码RNA特征,并在多个队列中进行了验证。该特征为GBM的临床管理和精准治疗提供了新的视角。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/383d/8866949/db2816ad49b4/fcell-10-805291-g007.jpg
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