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作为化学图灵机的用于分子计算的pH振荡系统。

pH Oscillating System for Molecular Computation as a Chemical Turing Machine.

作者信息

Draper Thomas C, Poros-Tarcali Eszter, Pérez-Mercader Juan

机构信息

Department of Earth and Planetary Sciences and Origins of Life Initiative, Harvard University, Cambridge, Massachusetts 02138-1204, United States.

Santa Fe Institute, Santa Fe, New Mexico 87501, United States.

出版信息

ACS Omega. 2022 Feb 4;7(7):6099-6103. doi: 10.1021/acsomega.1c06505. eCollection 2022 Feb 22.

DOI:10.1021/acsomega.1c06505
PMID:35224372
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8867811/
Abstract

It has previously been demonstrated that native chemical Turing machines can be constructed by exploiting the nonlinear dynamics of the homogeneous oscillating Belousov-Zhabotinsky reaction. These Turing machines can perform word recognition of a Chomsky type 1 context sensitive language (CSL), demonstrating their high computing power. Here, we report on a chemical Turing machine that has been developed using the HO-HSO-SO -CO pH oscillating system. pH oscillators are different to bromate oscillators in two key ways: the proton is the autocatalytic agent, and at least one of the reductants is always fully consumed in each turnover-meaning the system has to be operated as a flow reactor. Through careful design, we establish a system that can also perform Chomsky type 1 CSL word recognition and demonstrate its power through the testing of a series of in-language and out-of-language words.

摘要

先前已经证明,可以通过利用均匀振荡的贝洛索夫-扎博廷斯基反应的非线性动力学来构建天然化学图灵机。这些图灵机可以执行乔姆斯基1型上下文敏感语言(CSL)的单词识别,展示了它们的高计算能力。在这里,我们报告一种使用HO-HSO-SO-CO pH振荡系统开发的化学图灵机。pH振荡器在两个关键方面与溴酸盐振荡器不同:质子是自催化剂,并且在每次周转中至少有一种还原剂总是被完全消耗——这意味着该系统必须作为流动反应器运行。通过精心设计,我们建立了一个也能执行乔姆斯基1型CSL单词识别的系统,并通过对一系列语言内和语言外单词的测试来展示其能力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d148/8867811/5fb061cc1195/ao1c06505_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d148/8867811/1d19095bc48e/ao1c06505_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d148/8867811/befd8c632981/ao1c06505_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d148/8867811/5fb061cc1195/ao1c06505_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d148/8867811/1d19095bc48e/ao1c06505_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d148/8867811/befd8c632981/ao1c06505_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d148/8867811/5fb061cc1195/ao1c06505_0004.jpg

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本文引用的文献

1
Exploring the symbol processing 'time interval' parametric constraint in a Belousov-Zhabotinsky operated chemical Turing machine.探索在别洛索夫-扎博京斯基操作的化学图灵机中的符号处理“时间间隔”参数约束。
RSC Adv. 2021 Jul 13;11(37):23151-23160. doi: 10.1039/d1ra03856g. eCollection 2021 Jun 25.
2
Native Chemical Computation. A Generic Application of Oscillating Chemistry Illustrated With the Belousov-Zhabotinsky Reaction. A Review.天然化学计算。以贝洛索夫-扎博京斯基反应为例说明振荡化学的一般应用。综述。
Front Chem. 2021 May 11;9:611120. doi: 10.3389/fchem.2021.611120. eCollection 2021.
3
Periodic Polymerization and the Generation of Polymer Giant Vesicles Autonomously Driven by pH Oscillatory Chemistry.
周期性聚合反应以及由pH振荡化学自主驱动的聚合物巨型囊泡的生成
Front Chem. 2021 Feb 22;9:576349. doi: 10.3389/fchem.2021.576349. eCollection 2021.
4
Concurrent self-regulated autonomous synthesis and functionalization of pH-responsive giant vesicles by a chemical pH oscillator.通过化学pH振荡器实现pH响应性巨型囊泡的同步自调节自主合成与功能化
Soft Matter. 2021 Apr 21;17(15):4011-4018. doi: 10.1039/d1sm00150g.
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In-vitro reconfigurability of native chemical automata, the inclusiveness of their hierarchy and their thermodynamics.天然化学自动机的体外可重构性、其层次结构的包容性及其热力学。
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How Chemistry Computes: Language Recognition by Non-Biochemical Chemical Automata. From Finite Automata to Turing Machines.化学如何进行计算:非生化化学自动机的语言识别。从有限自动机到图灵机。
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