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埃塞俄比亚山地森林鸟类(雀形目:雀形目)种群中,被东非大裂谷分隔的多样化模式和独特的种群动态轨迹。

Varied diversification patterns and distinct demographic trajectories in Ethiopian montane forest bird (Aves: Passeriformes) populations separated by the Great Rift Valley.

作者信息

Manthey Joseph D, Bourgeois Yann, Meheretu Yonas, Boissinot Stéphane

机构信息

Department of Biological Sciences, Texas Tech University, Lubbock, Texas, USA.

School of Biological Sciences, University of Portsmouth, Portsmouth, UK.

出版信息

Mol Ecol. 2022 May;31(9):2664-2678. doi: 10.1111/mec.16417. Epub 2022 Mar 13.

DOI:10.1111/mec.16417
PMID:35239243
Abstract

Taxon-specific characteristics and extrinsic climatic and geological forces may both shape population differentiation and speciation. In geographically and taxonomically focused investigations, differentiation may occur synchronously as species respond to the same external conditions. Conversely, when evolution is investigated in taxa with largely varying traits, population differentiation and speciation is complex and shaped by interactions of Earth's template and species-specific traits. As such, it is important to characterize evolutionary histories broadly across the tree of life, especially in geographic regions that are exceptionally diverse and under pressures from human activities such as in biodiversity hotspots. Here, using whole-genome sequencing data, we characterize genomic variation in populations of six Ethiopian Highlands forest bird species separated by a lowland biogeographic barrier, the Great Rift Valley (GRV). In all six species, populations on either side of the GRV exhibited significant but varying levels of genetic differentiation. Species' dispersal ability was negatively correlated with levels of population differentiation. Isolation with migration models indicated varied patterns of population differentiation and connectivity among populations of the focal species. We found that demographic histories-estimated for each individual-varied by both species and population but were consistent between individuals of the same species and sampling region. We found that genomic diversity varied by half an order of magnitude across species, and that this variation could largely be explained by the harmonic mean of effective population size over the past 200,000 years. Overall, we found that even in highly dispersive species like birds, the GRV acts as a substantial biogeographic barrier.

摘要

特定分类群的特征以及外在的气候和地质力量都可能塑造种群分化和物种形成。在以地理和分类为重点的研究中,随着物种对相同外部条件的响应,分化可能会同步发生。相反,当在具有很大不同特征的分类群中研究进化时,种群分化和物种形成是复杂的,并受到地球模板和物种特定特征相互作用的影响。因此,全面描述整个生命之树的进化历史非常重要,尤其是在生物多样性热点等人类活动压力下异常多样的地理区域。在这里,我们使用全基因组测序数据,描述了六种埃塞俄比亚高地森林鸟类种群的基因组变异,这些种群被一个低地生物地理屏障——东非大裂谷(GRV)隔开。在所有六个物种中,GRV两侧的种群都表现出显著但不同程度的遗传分化。物种的扩散能力与种群分化水平呈负相关。隔离与迁移模型表明了重点物种种群之间不同的种群分化和连通模式。我们发现,针对每个个体估计的种群历史因物种和种群而异,但在同一物种和采样区域的个体之间是一致的。我们发现,基因组多样性在不同物种间相差半个数量级,并且这种差异在很大程度上可以用过去20万年有效种群大小的调和平均值来解释。总体而言,我们发现即使在像鸟类这样高度扩散的物种中,GRV也起着重要的生物地理屏障作用。

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