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实验测定的和预测的蛋白质N-糖基化以及预测的糖基磷脂酰肌醇锚定添加在……中的可视化

Visualisation of experimentally determined and predicted protein N-glycosylation and predicted glycosylphosphatidylinositol anchor addition in .

作者信息

Tinti Michele, Ferguson Michael A J

机构信息

Wellcome Centre for Anti-Infectives Research (WCAIR), School of Life Sciences, University of Dundee, Dundee, Scotland, DD1 5HN, UK.

出版信息

Wellcome Open Res. 2022 Jan 31;7:33. doi: 10.12688/wellcomeopenres.17640.1. eCollection 2022.

Abstract

is a protozoan parasite and the etiological agent of human and animal African trypanosomiasis. The organism cycles between its mammalian host and tsetse vector. The host-dwelling bloodstream form of the parasite is covered with a monolayer of variant surface glycoprotein (VSG) that enables it to escape both the innate and adaptive immune systems. Within this coat reside lower-abundance surface glycoproteins that function as receptors and/or nutrient transporters. The glycosylation of the surface proteome is essential to evade the immune response and is mediated by three oligosaccharyltransferase genes; two of which, TbSTT3A and TbSTT3B, are expressed in the bloodstream form of the parasite. We processed a recent dataset of our laboratory to visualise putative glycosylation sites of the Trypanosoma brucei proteome. We provided a visualisation for the predictions of glycosylation carried by TbSTT3A and TbSTT3B, and we augmented the visualisation with predictions for Glycosylphosphatidylinositol anchoring sites, domains and topology of the Trypanosoma brucei proteome. We created a web service to explore the glycosylation sites of the Trypanosoma brucei oligosaccharyltransferases substrates, using data described in a recent publication of our laboratory. We also made a machine learning algorithm available as a web service, described in our recent publication, to distinguish between TbSTT3A and TbSTT3B substrates.

摘要

是一种原生动物寄生虫,也是人类和动物非洲锥虫病的病原体。该生物体在其哺乳动物宿主和采采蝇媒介之间循环。寄生虫在宿主体内的血流形式覆盖有一层变异表面糖蛋白(VSG),使其能够逃避先天免疫系统和适应性免疫系统。在这层包膜中存在丰度较低的表面糖蛋白,它们作为受体和/或营养转运蛋白发挥作用。表面蛋白质组的糖基化对于逃避免疫反应至关重要,并且由三个寡糖基转移酶基因介导;其中两个,TbSTT3A和TbSTT3B,在寄生虫的血流形式中表达。我们处理了我们实验室最近的一个数据集,以可视化布氏锥虫蛋白质组的假定糖基化位点。我们提供了由TbSTT3A和TbSTT3B进行的糖基化预测的可视化,并通过对布氏锥虫蛋白质组的糖基磷脂酰肌醇锚定位点、结构域和拓扑结构的预测增强了可视化效果。我们创建了一个网络服务,使用我们实验室最近一篇出版物中描述的数据来探索布氏锥虫寡糖基转移酶底物的糖基化位点。我们还提供了一种机器学习算法作为网络服务,如我们最近的出版物中所述,用于区分TbSTT3A和TbSTT3B底物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ff/8886175/28dc0e3ce6ba/wellcomeopenres-7-19514-g0000.jpg

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