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酪氨酸硫酸化对趋化因子受体-趋化因子CXCR4-CXCL12复合物的变构调节

Allosteric modulation of the chemokine receptor-chemokine CXCR4-CXCL12 complex by tyrosine sulfation.

作者信息

Sonawani Archana, Kharche Shalmali, Dasgupta Debjani, Sengupta Durba

机构信息

School of Biotechnology and Bioinformatics, D.Y. Patil Deemed to be University, CBD Belapur, Navi Mumbai 400614, India.

CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune 411 008, India.

出版信息

Int J Biol Macromol. 2022 May 1;206:812-822. doi: 10.1016/j.ijbiomac.2022.03.078. Epub 2022 Mar 17.

Abstract

The chemokine receptor CXCR4 and its cognate ligand CXCL12 mediate pathways that lead to cell migration and chemotaxis. Although the structural details of related receptor-ligand complexes have been resolved, the roles of the N-terminal domain of the receptor and post-translational sulfation that are determinants of ligand selectivity and affinity remain unclear. Here, we analyze the structural dynamics induced by receptor sulfation by combining molecular dynamics, docking and network analysis. The sulfotyrosine residues, 7Ys, 12Ys and 21Ys allow the N-terminal domain of the apo-sulfated receptor to adopt an "open" conformation that appears to facilitate ligand binding. The overall topology of the CXCR4-CXCL12 complex is independent of the sulfation state, but an extensive network of protein-protein interactions characterizes the sulfated receptor, in line with its increased ligand affinity. The altered interactions of sulfotyrosine residues, such as 21Ys-47R replacing the 21Y-13F interaction, propagate via allosteric pathways towards the receptor lumen. In particular, our results suggest that the experimentally-reported receptor-ligand interactions 262D-8R and 277E-12R could be dependent on the sulfation state of the receptor and need to be carefully analyzed. Our work is an important step in understanding chemokine-receptor interactions and how post-translational modifications could modulate receptor-ligand complexes.

摘要

趋化因子受体CXCR4及其同源配体CXCL12介导导致细胞迁移和趋化性的信号通路。尽管相关受体-配体复合物的结构细节已得到解析,但受体N端结构域的作用以及作为配体选择性和亲和力决定因素的翻译后硫酸化作用仍不清楚。在此,我们通过结合分子动力学、对接和网络分析来分析受体硫酸化诱导的结构动力学。硫酸化酪氨酸残基7Ys、12Ys和21Ys使去硫酸化受体的N端结构域呈现一种“开放”构象,这似乎有利于配体结合。CXCR4-CXCL12复合物的整体拓扑结构与硫酸化状态无关,但硫酸化受体具有广泛的蛋白质-蛋白质相互作用网络,这与其增加的配体亲和力一致。硫酸化酪氨酸残基相互作用的改变,如21Ys-47R取代21Y-13F相互作用,通过变构途径向受体腔传播。特别是,我们的结果表明,实验报道的受体-配体相互作用262D-8R和277E-12R可能取决于受体的硫酸化状态,需要仔细分析。我们的工作是理解趋化因子-受体相互作用以及翻译后修饰如何调节受体-配体复合物的重要一步。

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