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在基因表达空间中致癌作用的一维无参数模型。

A one-dimensional parameter-free model for carcinogenesis in gene expression space.

机构信息

Institute of Metrology, 10200, Havana, Cuba.

Institute of Cybernetics, Mathematics and Physics, 10400, Havana, Cuba.

出版信息

Sci Rep. 2022 Mar 19;12(1):4748. doi: 10.1038/s41598-022-08502-8.

DOI:10.1038/s41598-022-08502-8
PMID:35306505
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8934350/
Abstract

A small portion of a tissue defines a microstate in gene expression space. Mutations, epigenetic events or external factors cause microstate displacements which are modeled by combining small independent gene expression variations and large Levy jumps, resulting from the collective variations of a set of genes. The risk of cancer in a tissue is estimated as the microstate probability to transit from the normal to the tumor region in gene expression space. The formula coming from the contribution of large Levy jumps seems to provide a qualitatively correct description of the lifetime risk of cancer in 8 tissues, and reveals an interesting connection between the risk and the way the tissue is protected against infections.

摘要

组织的一小部分定义了基因表达空间中的微观状态。突变、表观遗传事件或外部因素导致微观状态位移,这些位移通过结合小的独立基因表达变化和大的 Levy 跳跃来建模,这些跳跃是由一组基因的集体变化引起的。组织中癌症的风险估计为基因表达空间中从正常状态到肿瘤区域的微观状态概率。来自大 Levy 跳跃贡献的公式似乎为 8 种组织中的癌症终生风险提供了定性上正确的描述,并揭示了风险与组织抵御感染的方式之间的有趣联系。

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Estimating the number of available states for normal and tumor tissues in gene expression space.估计基因表达空间中正常组织和肿瘤组织的可用状态数量。
Biophys Rep (N Y). 2022 Mar 30;2(2):100053. doi: 10.1016/j.bpr.2022.100053. eCollection 2022 Jun 8.
3
Mutations as Levy flights.突变作为 Levy 飞行。
Sci Rep. 2021 May 10;11(1):9889. doi: 10.1038/s41598-021-88012-1.
4
Gene expression rearrangements denoting changes in the biological state.基因表达重排表示生物状态的变化。
Sci Rep. 2021 Apr 19;11(1):8470. doi: 10.1038/s41598-021-87764-0.
5
The Water Channel Aquaporin 8 is a Critical Regulator of Intestinal Fluid Homeostasis in Collagenous Colitis.水通道蛋白 8 是胶原性结肠炎肠道液体动态平衡的关键调节因子。
J Crohns Colitis. 2020 Jul 30;14(7):962-973. doi: 10.1093/ecco-jcc/jjaa020.
6
Carcinogens and DNA damage.致癌物与 DNA 损伤。
Biochem Soc Trans. 2018 Oct 19;46(5):1213-1224. doi: 10.1042/BST20180519. Epub 2018 Oct 3.
7
Prognostic significance of cystatin SN associated nomograms in patients with colorectal cancer.胱抑素SN相关列线图在结直肠癌患者中的预后意义
Oncotarget. 2017 Dec 8;8(70):115153-115163. doi: 10.18632/oncotarget.23041. eCollection 2017 Dec 29.
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