Berthoud Hélène, Wechsler Daniel, Irmler Stefan
Agroscope, Bern, Switzerland.
Front Microbiol. 2022 Mar 3;13:842403. doi: 10.3389/fmicb.2022.842403. eCollection 2022.
Lactic acid bacteria (LAB) play a key role in many food fermentations. However, some LAB species can also cause food spoilage, e.g., through the formation of biogenic amines. is a LAB that causes late gas production in Cheddar cheese, the molecular causes of which are not fully understood. This study reports on the ability of WDC04 to produce cadaverine and putrescine in broth supplemented with lysine and ornithine, as well as in a model cheese. The raclette-type semi-hard cheese produced with as an adjunct culture contained 1,085 mg kg of cadaverine and 304 mg kg of putrescine after 120 days of ripening. We identified two ornithine decarboxylase genes () and a putrescine-ornithine antiporter gene in the genome sequence of . We could show that the two genes, which are located on two contigs, are contiguous and form the genetic cluster . Alignment searches showed that similar gene clusters exist in the genomes of DSMZ22467, YH-lac9, 151-2B, and 220-4. More amino acid sequence comparisons showed that Odc1 and Odc2 shared 72 and 69% identity with a lysine and ornithine decarboxylase from 30a, respectively. To clarify the catalytic activities of both enzymes, the -coding genes were cloned and heterologously expressed as His-tagged fusion protein. The purified Odc1 protein decarboxylated lysine into cadaverine, while the recombinant Odc2 protein preferentially produced putrescine from ornithine but also exhibited low lysine decarboxylating activity. Both enzymes were active at pH of 5.5, a value often found in cheese. To our knowledge, this is only the second lysine decarboxylase in LAB whose function has been verified. The tandem arrangement of the genes in a single cluster suggests a gene duplication, evolving the ability to metabolize more amino. Divergent substrate preferences highlight the necessity of verifying the functions of genes, in addition to automatic annotation based on sequence similarity. Acquiring new biochemical data allows better predictive models and, in this case, more accurate biogenic amine production potential for LAB strains and microbiomes.
乳酸菌(LAB)在许多食品发酵过程中发挥着关键作用。然而,一些乳酸菌种类也会导致食品变质,例如通过生物胺的形成。[具体菌株名称]是一种在切达干酪中导致后期产气的乳酸菌,其分子原因尚未完全了解。本研究报告了[具体菌株名称]WDC04在补充了赖氨酸和鸟氨酸的肉汤以及模型奶酪中产生尸胺和腐胺的能力。用[具体菌株名称]作为辅助培养物生产的瑞可莱型半硬质奶酪在成熟120天后含有1085毫克/千克的尸胺和304毫克/千克的腐胺。我们在[具体菌株名称]的基因组序列中鉴定出两个鸟氨酸脱羧酶基因([基因名称1]和[基因名称2])以及一个腐胺-鸟氨酸反向转运蛋白基因[基因名称3]。我们可以证明,位于两个重叠群上的这两个[基因名称]基因是相邻的,并形成了基因簇[基因簇名称]。比对搜索表明,在[具体菌株名称]DSMZ22467、[具体菌株名称]YH-lac9、[具体菌株名称]151-2B和[具体菌株名称]220-4的基因组中存在相似的基因簇。更多的氨基酸序列比较表明,Odc1和Odc2与来自[具体菌株名称]30a的赖氨酸和鸟氨酸脱羧酶分别具有72%和69%的同一性。为了阐明这两种酶的催化活性,克隆了编码[基因名称]的基因,并将其作为带有His标签的融合蛋白进行异源表达。纯化后的Odc1蛋白将赖氨酸脱羧生成尸胺,而重组Odc2蛋白优先从鸟氨酸产生腐胺,但也表现出较低的赖氨酸脱羧活性。这两种酶在pH 5.5时均有活性,这是奶酪中常见的pH值。据我们所知,这是乳酸菌中第二个功能已得到验证的赖氨酸脱羧酶。单个簇中基因的串联排列表明发生了基因复制,从而进化出代谢更多氨基酸的能力。不同的底物偏好突出了除基于序列相似性的自动注释外,验证基因功能的必要性。获取新的生化数据可以建立更好的预测模型,在这种情况下,可以更准确地预测乳酸菌菌株和微生物群落产生生物胺的潜力。