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基于16S核糖体RNA高通量测序探究加味四君子汤对重度烫伤兔肠道微生物群落多样性的影响

[Investigating the effects of Modified Sijunzi Decoction on the diversity of intestinal microflora of severe scald rabbits based on 16S ribosomal RNA high-throughput sequencing].

作者信息

Luo J H, Zhan J H, Liao W W, Cheng X, Huang K

机构信息

Burn and Wound Repair Center, the First Affiliated Hospital of Nanchang University, Nanchang 330006, China.

出版信息

Zhonghua Shao Shang Yu Chuang Mian Xiu Fu Za Zhi. 2022 Mar 20;38(3):227-235. doi: 10.3760/cma.j.cn501120-20200923-00421.

Abstract

To investigate the effects of Modified Sijunzi Decoction on the diversity of intestinal microflora of in severe scald rabbits based on 16S ribosomal RNA (16S rRNA) high-throughput sequencing. The experimental research method was adopted. Ninety Japanese big-ear rabbits regardless gender, aged 6 to 8 months, were randomly divided into normal control group, scald alone group, scald+low-dose group, scald+medium-dose group, and scald+high-dose group, with 18 rabbits in each group. The rabbits in normal control group were free to eat and drink, and the rabbits in scald alone group, scald+low-dose group, scald+medium-dose group, and scald+high-dose group were intragastrically administered normal saline, 0.2 g/mL Modified Sijunzi Decoction, 1.0 g/mL Modified Sijunzi Decoction, and 5.0 g/mL Modified Sijunzi Decoction, respectively for 7 days after sustaining full-thickness scalding of 30% total body surface area. On the 1, 3, and 7 day after grouping, the levels of tumor necrosis factor α (TNF-α), interleukin 1β (IL-1β), and IL-10 in ileal mucosa tissue of rabbits in each group were determined by enzyme-linked immunosorbent assay, and the number of samples in each group at each time point was 6. According to the above experimental results, another 9 rabbits were selected and divided into normal control group, scald alone group and scald+medium-dose group, with 3 rabbits in each group. The grouping and treatment methods of rabbits in each group were the same as before. On the 7 day after grouping, the V3, V4 region of 16S rRNA of ileum mucosa of rabbits in three groups were sequenced by high-throughput sequencing technology. The number of quality bacteria was counted by QIME software. The classifications of phylum, class, order, family and genus of microflora were analyzed by RDP Classifier software. The α diversity (Ace, Chao1, Simpson, and Shannon indexes) and β diversity were analyzed by Illumina MiSeq sequencing technology, and the number of experiment samples in each group was 3. Data were statistically analyzed with analysis for variance of factorial design, SNK test, and Bonferroni correction. Compared with that in normal control group, the levels of TNF-α of ileal mucosa tissue of rabbits in scald alone group, scald+low-dose group, and scald+high-dose group on the 1, 3, and 7 day after grouping and scald+medium-dose group on the 1 and 3 day after grouping were all significantly increased (<0.01), the levels of IL-1β in ileal mucosa tissue of rabbits in scald alone group, scald+low-dose group, scald+medium-dose group and scald+high-dose group on the 1, 3, and 7 day after grouping were all significantly increased (<0.05 or <0.01), and the levels of IL-10 in ileal mucosa tissue of rabbits in scald alone group, scald+low-dose group, scald+medium-dose group, and scald+high-dose group on the 1, 3, and 7 day after grouping were all significantly decreased (<0.01). Compared with that in scald alone group, the levels of TNF-α in ileal mucosa tissue of rabbits in scald+low-dose group, scald+medium-dose group, and scald+high-dose group on the 3 and 7 day after grouping, and scald+medium-dose group on the 1 day after grouping were all significantly decreased (<0.01), and the levels of IL-1β in ileal mucosa tissue of rabbits in scald+low-dose group, scald+medium-dose group, and scald+high-dose group on the 3 and 7 day after grouping and scald+medium-dose group on the 1 day after grouping were all significantly decreased (<0.01), and the levels of IL-10 in ileal mucosa tissue of rabbits in scald+low-dose group on the 7 day after grouping and scald+medium-dose group on the 1, 3, and 7 day after grouping and scald+high-dose group on the 3 and 7 day after grouping were all significantly increased (<0.05 or <0.01). Compared with that in scald+low-dose group, the levels of TNF-α in ileal mucosa tissue of rabbits in medium-dose scald alone group on the 1, 3, and 7 day after grouping and in high-dose scald alone group on the 3 and 7 day after grouping were significantly decreased (<0.01), and the levels of IL-1β in ileal mucosa tissue of rabbits in medium-dose scald alone group on the 1, 3, and 7 day after grouping and in high-dose scald alone group on the 3 and 7 day after grouping were all significantly decreased (<0.05 or <0.01), and the levels of IL-10 in ileal mucosa tissue of rabbits in scald+medium-dose group on the 1, 3, and 7 day after grouping and in scald+high-dose group on the 7 day after grouping were all significantly increased (<0.05 or <0.01). Compared with that in scald medium-dose group, the levels of TNF-α in ileal mucosa tissue of rabbits in scald+high-dose group on the 1, 3, and 7 day after grouping were all significantly increased (<0.01), and the levels of IL-10 in ileal mucosa tissue of rabbits in scald+high-dose group on the 1, 3, and 7 day after grouping were all significantly decreased (<0.01), and the levels of IL-1β in ileal mucosa tissue of rabbits in scald+high-dose group on the 7 day after grouping was significantly decreased (<0.01). Compared with that on the 1 day after grouping, the levels of TNF-α in ileal mucosa tissue of rabbits in scald alone group on the 3 and 7 day after grouping and in normal control group on the 3 day after grouping were all significantly increased (<0.05 or <0.01), and the levels of IL-1β in ileal mucosa tissue of rabbits in scald alone group both on the 3 and 7 day after grouping were significantly increased (<0.01), and the levels of IL-10 in ileal mucosa tissue of rabbits in both scald+low-dose group and scald+high-dose group on the 7 day after grouping and scald+medium-dose group both on the 3 and 7 day after grouping were significantly increased (<0.05 or <0.01), and the levels of TNF-α in ileal mucosa tissue of rabbits in scald+high-dose group on the 3 and 7 day after grouping and in scald+medium-dose group on the 7 day after grouping were all significantly decreased (<0.05 or <0.01), and the level of IL-1β in ileal mucosa tissue of rabbits in scald+medium-dose group on the 7 day after grouping was significantly decreased (<0.01), and the level of IL-10 in ileal mucosa tissue of rabbits in scald alone group on the 7 day after grouping was significantly decreased (<0.01). Compared with that on the 3 day after grouping, the levels of TNF-α and IL-1β in ileal mucosa tissue of rabbits in scald alone group and the levels of IL-10 in ileal mucosa tissue of rabbits in normal control group, scald+low-dose group, scald+medium-dose group, and scald+high-dose group on the 7 day after grouping were all significantly increased (<0.05 or <0.01); and the levels of TNF-α in ileal mucosa tissue of rabbits in scald+low-dose group, scald+medium-dose group, and scald+high-dose group on the 7 day after grouping were all significantly decreased (<0.05), and the levels of IL-1β in ileal mucosa tissue of rabbits both in scald+medium-dose group and scald+high-dose group on the 7 day after grouping were significantly decreased (<0.05 or <0.01), and the levels of IL-10 in ileal mucosa tissue of rabbits in scald alone group on the 7 day after grouping was significantly decreased (<0.01). On the 7 day after grouping, the high-quality sequences obtained from the microflora in ileum mucosa of rabbits in normal control group, scald alone group, and scald+medium-dose group were 96 023, 107 365, and 95 921, respectively. At the classification level of phylum, class, order, family, and genus of the microflora in ileum mucosa of rabbits in three groups were all and , and and , and and , and and mainly, while the percentage of microflora in each group was different. There were no significant differences in Ace, Chao1, Simpson, Shannon indices (>0.05), and no obvious difference in β diversity of microflora in ileal mucosa tissue of rabbits among three groups. After severe scalding, the inflammatory response of rabbit ileal mucosa tissue is obvious and increased in a time-dependent manner. Modified Sijunzi Decoction can reduce inflammation with optimal therapeutic concentration of 1.0 g/mL. The technology of high-throughput sequencing can reflect the structural composition of the intestinal microflora accurately. The ileal microflora of the severe scald rabbit can be regulated by the administration of Modified Sijunzi Decoction.

摘要

基于16S核糖体RNA(16S rRNA)高通量测序技术,研究加味四君子汤对重度烫伤兔肠道微生物菌群多样性的影响。采用实验研究方法。选取90只6至8月龄、不分性别的日本大耳白兔,随机分为正常对照组、单纯烫伤组、烫伤+低剂量组、烫伤+中剂量组和烫伤+高剂量组,每组18只。正常对照组兔子自由饮食,单纯烫伤组、烫伤+低剂量组、烫伤+中剂量组和烫伤+高剂量组兔子在全身30%体表面积遭受全层烫伤后,分别灌胃生理盐水、0.2 g/mL加味四君子汤、1.0 g/mL加味四君子汤和5.0 g/mL加味四君子汤,连续7天。分组后第1、3、7天,采用酶联免疫吸附测定法测定每组兔子回肠黏膜组织中肿瘤坏死因子α(TNF-α)、白细胞介素1β(IL-1β)和IL-10的水平,每个时间点每组样本数为6。根据上述实验结果,另选9只兔子,分为正常对照组、单纯烫伤组和烫伤+中剂量组,每组3只。每组兔子的分组和处理方法同前。分组后第7天,采用高通量测序技术对三组兔子回肠黏膜16S rRNA的V3、V4区域进行测序。用QIME软件统计优质菌数量。用RDP Classifier软件分析微生物菌群的门、纲、目、科、属分类情况。采用Illumina MiSeq测序技术分析α多样性(Ace、Chao1、Simpson和Shannon指数)和β多样性,每组实验样本数为3。数据采用析因设计方差分析、SNK检验和Bonferroni校正进行统计学分析。与正常对照组相比,单纯烫伤组、烫伤+低剂量组、烫伤+高剂量组兔子分组后第1、3、7天以及烫伤+中剂量组分组后第1、3天回肠黏膜组织中TNF-α水平均显著升高(<0.01),单纯烫伤组、烫伤+低剂量组、烫伤+中剂量组和烫伤+高剂量组兔子分组后第1、3、7天回肠黏膜组织中IL-1β水平均显著升高(<0.05或<0.01),单纯烫伤组、烫伤+低剂量组、烫伤+中剂量组和烫伤+高剂量组兔子分组后第1、3、7天回肠黏膜组织中IL-10水平均显著降低(<0.01)。与单纯烫伤组相比,烫伤+低剂量组、烫伤+中剂量组和烫伤+高剂量组兔子分组后第3、7天以及烫伤+中剂量组分组后第1天回肠黏膜组织中TNF-α水平均显著降低(<0.01),烫伤+低剂量组、烫伤+中剂量组和烫伤+高剂量组兔子分组后第3、7天以及烫伤+中剂量组分组后第1天回肠黏膜组织中IL-1β水平均显著降低(<0.01),烫伤+低剂量组兔子分组后第7天以及烫伤+中剂量组分组后第1、3、7天和烫伤+高剂量组兔子分组后第3、7天回肠黏膜组织中IL-10水平均显著升高(<0.05或<0.01)。与烫伤+低剂量组相比,中剂量单纯烫伤组兔子分组后第1、3、7天以及高剂量单纯烫伤组兔子分组后第3、7天回肠黏膜组织中TNF-α水平显著降低(<0.01),中剂量单纯烫伤组兔子分组后第1、3、7天以及高剂量单纯烫伤组兔子分组后第3、7天回肠黏膜组织中IL-1β水平均显著降低(<0.05或<0.01),烫伤+中剂量组兔子分组后第1、3、7天以及烫伤+高剂量组兔子分组后第7天回肠黏膜组织中IL-10水平均显著升高(<0.05或<0.01)。与烫伤中剂量组相比,烫伤+高剂量组兔子分组后第1、3、7天回肠黏膜组织中TNF-α水平均显著升高(<0.01),烫伤+高剂量组兔子分组后第1、3、7天回肠黏膜组织中IL-10水平均显著降低(<0.01),烫伤+高剂量组兔子分组后第7天回肠黏膜组织中IL-1β水平显著降低(<0.01)。与分组后第1天相比,单纯烫伤组兔子分组后第3、7天以及正常对照组兔子分组后第3天回肠黏膜组织中TNF-α水平均显著升高(<0.05或<0.01),单纯烫伤组兔子分组后第3、7天回肠黏膜组织中IL-1β水平均显著升高(<0.01),烫伤+低剂量组和烫伤+高剂量组兔子分组后第7天以及烫伤+中剂量组兔子分组后第3、7天回肠黏膜组织中IL-10水平均显著升高(<0.05或<0.01),烫伤+高剂量组兔子分组后第3、7天以及烫伤+中剂量组兔子分组后第7天回肠黏膜组织中TNF-α水平均显著降低(<0.05或<0.01),烫伤+中剂量组兔子分组后第7天回肠黏膜组织中IL-1β水平显著降低(<0.01),单纯烫伤组兔子分组后第7天回肠黏膜组织中IL-10水平显著降低(<0.01)。与分组后第3天相比,单纯烫伤组兔子回肠黏膜组织中TNF-α和IL-1β水平以及正常对照组、烫伤+低剂量组、烫伤+中剂量组和烫伤+高剂量组兔子分组后第7天回肠黏膜组织中IL-10水平均显著升高(<0.05或<0.01);烫伤+低剂量组、烫伤+中剂量组和烫伤+高剂量组兔子分组后第7天回肠黏膜组织中TNF-α水平均显著降低(<0.05),烫伤+中剂量组和烫伤+高剂量组兔子分组后第7天回肠黏膜组织中IL-1β水平均显著降低(<0.05或<0.01),单纯烫伤组兔子分组后第7天回肠黏膜组织中IL-10水平显著降低(<0.01)。分组后第7天,正常对照组、单纯烫伤组和烫伤+中剂量组兔子回肠黏膜微生物菌群获得的高质量序列分别为96 023、107 365和95 921。三组兔子回肠黏膜微生物菌群在门、纲、目、科、属分类水平上均以 、 、 、 、 为主,但每组微生物菌群所占百分比不同。三组兔子回肠黏膜组织微生物菌群的Ace、Chao1、Simpson、Shannon指数差异无统计学意义(>0.05),β多样性无明显差异。重度烫伤后,兔回肠黏膜组织炎症反应明显,并呈时间依赖性增强。加味四君子汤可减轻炎症,最佳治疗浓度为1.0 g/mL。高通量测序技术可准确反映肠道微生物菌群的结构组成。加味四君子汤灌胃可调节重度烫伤兔的回肠微生物菌群。

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