Center for RNA Biology and Therapeutics, Beckman Research Institute of City of Hope, Duarte, CA 91010, USA.
Irell and Manella Graduate School of Biological Sciences, Beckman Research Institute of City of Hope, Duarte, CA 91010, USA.
Genes (Basel). 2022 Feb 27;13(3):436. doi: 10.3390/genes13030436.
Small interfering RNAs (siRNAs) are artificial molecules used to silence genes of interest through the RNA interference (RNAi) pathway, mediated by the endoribonuclease Dicer. Dicer-substrate small interfering RNAs (DsiRNAs) are an alternative to conventional 21-mer siRNAs, with an increased effectiveness of up to 100-fold compared to traditional 21-mer designs. DsiRNAs have a novel asymmetric design that allows them to be processed by Dicer into the desired conventional siRNAs. DsiRNAs are a useful tool for sequence-specific gene silencing, but the molecular mechanism underlying their increased efficacy is not precisely understood. In this study, to gain a deeper understanding of Dicer function in DsiRNAs, we designed nicked DsiRNAs with and without tetra-loops to target a specific mRNA sequence, established a Dicer knockout in the HCT116 cell line, and analyzed the efficacy of various DsiRNAs on RNAi-mediated gene silencing activity. The gene silencing activity of all DsiRNAs was reduced in Dicer knockout cells. We demonstrated that tetra-looped DsiRNAs exhibited increased efficacy for gene silencing, which was mediated by Dicer protein. Thus, this study improves our understanding of Dicer function, a key component of RNAi silencing, which will inform RNAi research and applications.
小干扰 RNA(siRNAs)是一种人工分子,通过 RNA 干扰(RNAi)途径,由内切核酸酶 Dicer 介导,用于沉默感兴趣的基因。Dicer 底物小干扰 RNA(DsiRNAs)是传统 21 个核苷酸 siRNAs 的替代物,与传统 21 个核苷酸设计相比,其有效性提高了 100 倍。DsiRNAs 具有新颖的不对称设计,使其能够被 Dicer 加工成所需的常规 siRNAs。DsiRNAs 是一种用于序列特异性基因沉默的有用工具,但它们增加功效的分子机制尚不完全清楚。在这项研究中,为了更深入地了解 Dicer 在 DsiRNAs 中的功能,我们设计了带有和不带有四环的缺口 DsiRNAs 来靶向特定的 mRNA 序列,在 HCT116 细胞系中建立了 Dicer 敲除,并分析了各种 DsiRNAs 对 RNAi 介导的基因沉默活性的影响。在 Dicer 敲除细胞中,所有 DsiRNAs 的基因沉默活性均降低。我们证明了四环 DsiRNAs 表现出增强的基因沉默功效,这是由 Dicer 蛋白介导的。因此,这项研究提高了我们对 Dicer 功能的理解,Dicer 是 RNAi 沉默的关键组成部分,这将为 RNAi 研究和应用提供信息。