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蛋白质组学分析揭示了 TMW 1.2112 中β-D-葡聚糖形成和降解的酶。

Proteomic Analysis Reveals Enzymes for β-D-Glucan Formation and Degradation in TMW 1.2112.

机构信息

Lehrstuhl für Mikrobiologie, Technische Universität München, 85354 Freising, Germany.

Bayerisches Zentrum für Biomolekulare Massenspektrometrie (BayBioMS), Technische Universität München, 85354 Freising, Germany.

出版信息

Int J Mol Sci. 2022 Mar 21;23(6):3393. doi: 10.3390/ijms23063393.

Abstract

Bacterial exopolysaccharide (EPS) formation is crucial for biofilm formation, for protection against environmental factors, or as storage compounds. EPSs produced by lactic acid bacteria (LAB) are appropriate for applications in food fermentation or the pharmaceutical industry, yet the dynamics of formation and degradation thereof are poorly described. This study focuses on carbohydrate active enzymes, including glycosyl transferases (GT) and glycoside hydrolases (GH), and their roles in the formation and potential degradation of -substituted (1,3)-β-D-glucan of (.) TMW 1.2112. The fermentation broth of . TMW 1.2112 was analyzed for changes in viscosity, β-glucan, and D-glucose concentrations during the exponential, stationary, and early death phases. While the viscosity reached its maximum during the stationary phase and subsequently decreased, the β-glucan concentration only increased to a plateau. Results were correlated with secretome and proteome data to identify involved enzymes and pathways. The suggested pathway for β-glucan biosynthesis involved a β-1,3 glucan synthase (GT2) and enzymes from maltose phosphorylase (MP) operons. The decreased viscosity appeared to be associated with cell lysis as the β-glucan concentration did not decrease, most likely due to missing extracellular carbohydrate active enzymes. In addition, an operon was discovered containing known moonlighting genes, all of which were detected in both proteome and secretome samples.

摘要

细菌胞外多糖 (EPS) 的形成对于生物膜的形成、抵御环境因素或作为储存化合物至关重要。乳酸菌 (LAB) 产生的 EPS 适用于食品发酵或制药行业的应用,但形成和降解的动态描述较差。本研究重点关注碳水化合物活性酶,包括糖基转移酶 (GT) 和糖苷水解酶 (GH),以及它们在 (.) TMW 1.2112 的 -取代 (1,3)-β-D-葡聚糖形成和潜在降解中的作用。分析了. TMW 1.2112 的发酵液在指数期、静止期和早期死亡期期间粘度、β-葡聚糖和 D-葡萄糖浓度的变化。虽然粘度在静止期达到最大值,随后降低,但 β-葡聚糖浓度仅增加到一个平台。结果与分泌组和蛋白质组数据相关联,以鉴定涉及的酶和途径。β-葡聚糖生物合成的建议途径涉及 β-1,3 葡聚糖合酶 (GT2) 和麦芽糖磷酸化酶 (MP) 操纵子中的酶。粘度的降低似乎与细胞裂解有关,因为 β-葡聚糖浓度没有降低,很可能是由于缺少细胞外碳水化合物活性酶。此外,发现了一个包含已知的多功能基因的操纵子,所有这些基因在蛋白质组和分泌组样本中都被检测到。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03ad/8951740/ddd600b06824/ijms-23-03393-g001.jpg

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