Bindl Daniel, Mandal Pradeep K, Huc Ivan
Department of Pharmacy and Center for Integrated Protein Science, Ludwig-Maximilians-Universität, Butenandtstraße 5-13, München, 81377, Germany.
Chemistry. 2022 Jun 1;28(31):e202200538. doi: 10.1002/chem.202200538. Epub 2022 Apr 13.
A series of aromatic oligoamide foldamer sequences containing different proportions of three δ-amino acids derived from quinoline, pyridine, and benzene and possessing varying flexibility, for example due to methylene bridges, were synthesized. Crystallographic structures of two key sequences and H NMR data in water concur to show that a canonical aromatic helix fold prevails in almost all cases and that helix stability critically depends on the ratio between rigid and flexible units. Notwithstanding subtle variations of curvature, i. e. the numbers of units per turn, the aromatic δ-peptide helix is therefore shown to be general and tolerant of a great number of sp centers. We also demonstrate canonical helical folding upon alternating two monomers that do not promote folding when taken separately: folding occurs with two methylenes between every other unit, not with one methylene between every unit. These findings highlight that a fine-tuning of helix handedness inversion kinetics, curvature, and side chain positioning in aromatic δ-peptidic foldamers can be realized by systematically combining different yet compatible δ-amino acids.
合成了一系列芳香族寡酰胺折叠体序列,这些序列包含不同比例的源自喹啉、吡啶和苯的三种δ-氨基酸,并且具有不同的柔韧性,例如由于亚甲基桥的存在。两个关键序列的晶体结构和水中的核磁共振氢谱数据一致表明,在几乎所有情况下,典型的芳香螺旋折叠占主导,并且螺旋稳定性关键取决于刚性单元和柔性单元之间的比例。尽管曲率存在细微变化,即每圈的单元数,但芳香族δ-肽螺旋因此被证明是普遍存在的,并且对大量手性中心具有耐受性。我们还证明,当交替使用两种单独时不促进折叠的单体时会发生典型的螺旋折叠:折叠发生在每隔一个单元之间有两个亚甲基的情况下,而不是在每个单元之间有一个亚甲基的情况下。这些发现突出表明,通过系统地组合不同但兼容的δ-氨基酸,可以实现芳香族δ-肽折叠体中螺旋手性反转动力学、曲率和侧链定位的微调。