从活性污泥中分离出的反硝化副球菌R-1菌株的基因组序列及描述
Genome Sequence and Description of Paracoccus denitrificans Strain R-1, Isolated from Activated Sludge.
作者信息
Hu Chunchen, Wu Jiapeng, Wang Limei, Hong Yiguo
机构信息
Institute of Environmental Research at Greater Bay Area, Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, Guangzhou University, Guangzhou, People's Republic of China.
出版信息
Microbiol Resour Announc. 2022 Apr 21;11(4):e0123621. doi: 10.1128/mra.01236-21. Epub 2022 Mar 28.
Abstract
Paracoccus denitrificans strain R-1 was isolated from an activated sludge sample from a sewage treatment plant in Taiwan. The complete genome, which was sequenced on the NovaSeq 6000 and PacBio Sequel platforms, consists of one chromosome with 4.05 Mb and one plasmid with 689 kb. Genome annotation predicts 4,167 protein-coding genes, 49 tRNAs, and 8 rRNAs.
摘要
脱氮副球菌菌株R-1是从台湾一家污水处理厂的活性污泥样本中分离出来的。该完整基因组在NovaSeq 6000和PacBio Sequel平台上进行了测序，由一条4.05 Mb的染色体和一条689 kb的质粒组成。基因组注释预测有4167个蛋白质编码基因、49个tRNA和8个rRNA。
相似文献
1
Genome Sequence and Description of Paracoccus denitrificans Strain R-1, Isolated from Activated Sludge.从活性污泥中分离出的反硝化副球菌R-1菌株的基因组序列及描述
Microbiol Resour Announc. 2022 Apr 21;11(4):e0123621. doi: 10.1128/mra.01236-21. Epub 2022 Mar 28.
2
Complete Genome Sequence of the Bacterium Serratia marcescens SGAir0764, Isolated from Singapore Air.从新加坡空气分离出的粘质沙雷氏菌SGAir0764的全基因组序列
Genome Announc. 2018 Jul 5;6(27):e00637-18. doi: 10.1128/genomeA.00637-18.
3
Genome Sequence of Geobacillus thermoleovorans SGAir0734, Isolated from Singapore Air.从新加坡空气分离出的嗜热栖热放线菌SGAir0734的基因组序列
Genome Announc. 2018 Jul 5;6(27):e00636-18. doi: 10.1128/genomeA.00636-18.
4
Paracoccus shandongensis sp. nov., Isolated from Activated Sludge.山东副球菌（Paracoccus shandongensis），从活性污泥中分离得到。
Curr Microbiol. 2021 Dec 14;79(1):8. doi: 10.1007/s00284-021-02705-4.
5
Complete genome sequence of ATCC 19367 and its denitrification characteristics.ATCC 19367的全基因组序列及其反硝化特性。
Can J Microbiol. 2019 Jul;65(7):486-495. doi: 10.1139/cjm-2019-0037. Epub 2019 Mar 21.
6
Paracoccus binzhouensis sp. nov., isolated from activated sludge.滨州副球菌，一种从活性污泥中分离得到的新型细菌。
Arch Microbiol. 2021 Aug;203(6):3007-3013. doi: 10.1007/s00203-021-02286-7. Epub 2021 Mar 28.
7
Complete Genome Sequence of the Soil-Isolated sp. Strain AK 1817, Capable of Biotransforming the Ergostane Triterpenoid Antcin K.土壤分离菌株AK 1817的全基因组序列，该菌株能够对麦角甾烷三萜类化合物安替可宁K进行生物转化。
Microbiol Resour Announc. 2021 Oct 7;10(40):e0124220. doi: 10.1128/MRA.01242-20.
8
Complete Genome Sequence of Staphylococcus aureus Strain 834, Isolated from a Septic Patient in Japan.从日本一名败血症患者身上分离出的金黄色葡萄球菌834菌株的全基因组序列
Microbiol Resour Announc. 2021 Mar 4;10(9):e01477-20. doi: 10.1128/MRA.01477-20.
9
Complete Genome Sequence of Type Strain SGAir0031 Isolated from Tropical Air Collected in Singapore.从新加坡采集的热带空气中分离出的模式菌株SGAir0031的全基因组序列
Genome Announc. 2017 Nov 9;5(45):e01260-17. doi: 10.1128/genomeA.01260-17.
10
Draft Genome Sequence of the Arsenic-Resistant Bacterium TAR-002.抗砷细菌TAR-002的基因组序列草图
Genome Announc. 2017 Nov 22;5(47):e01326-17. doi: 10.1128/genomeA.01326-17.
引用本文的文献
1
Efficient nitrogen removal via simultaneous ammonium assimilation and heterotrophic denitrification of R-1.通过R-1同时进行铵同化和异养反硝化实现高效氮去除
iScience. 2024 Jul 30;27(9):110599. doi: 10.1016/j.isci.2024.110599. eCollection 2024 Sep 20.
2
Respiration and growth of R-1 with nitrous oxide as an electron acceptor.以氧化亚氮作为电子受体时 R-1 的呼吸和生长。
Microbiol Spectr. 2024 Jun 4;12(6):e0381123. doi: 10.1128/spectrum.03811-23. Epub 2024 Apr 22.
本文引用的文献
1
Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales.古菌直系同源基因簇 (arCOGs)：对热球菌目、甲烷球菌目和甲烷杆菌目之间共享特征进行分析的更新与应用。
Life (Basel). 2015 Mar 10;5(1):818-40. doi: 10.3390/life5010818.
2
Gene Ontology Consortium: going forward.基因本体论联盟：展望未来。
Nucleic Acids Res. 2015 Jan;43(Database issue):D1049-56. doi: 10.1093/nar/gku1179. Epub 2014 Nov 26.
3
Rfam 12.0: updates to the RNA families database.Rfam 12.0：RNA家族数据库的更新
Nucleic Acids Res. 2015 Jan;43(Database issue):D130-7. doi: 10.1093/nar/gku1063. Epub 2014 Nov 11.
4
Data, information, knowledge and principle: back to metabolism in KEGG.数据、信息、知识和原理：回到 KEGG 的代谢途径中。
Nucleic Acids Res. 2014 Jan;42(Database issue):D199-205. doi: 10.1093/nar/gkt1076. Epub 2013 Nov 7.
5
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.基因本体论：生物学统一工具。基因本体论联合会。
Nat Genet. 2000 May;25(1):25-9. doi: 10.1038/75556.
6
A genomic perspective on protein families.蛋白质家族的基因组视角。
Science. 1997 Oct 24;278(5338):631-7. doi: 10.1126/science.278.5338.631.
7
Dynamics of denitrification activity of Paracoccus denitrificans in continuous culture during aerobic-anaerobic changes.在有氧-厌氧变化期间，反硝化副球菌在连续培养中的反硝化活性动态。
J Bacteriol. 1996 Aug;178(15):4367-74. doi: 10.1128/jb.178.15.4367-4374.1996.
Zotero 插件