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"Is Omicron mild"? Testing this narrative with the mutational landscape of its three lineages and response to existing vaccines and therapeutic antibodies.“奥密克戎是否温和?”通过其三个谱系的突变景观以及对现有疫苗和治疗性抗体的反应来检验这一说法。
J Med Virol. 2022 Aug;94(8):3521-3539. doi: 10.1002/jmv.27749. Epub 2022 Apr 27.
2
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Immunogenicity of convalescent and vaccinated sera against clinical isolates of ancestral SARS-CoV-2, Beta, Delta, and Omicron variants.恢复期和接种疫苗血清对 SARS-CoV-2 原始株、Beta、Delta 和奥密克戎变异株临床分离株的免疫原性。
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Different Neutralization Profiles After Primary SARS-CoV-2 Omicron BA.1 and BA.2 Infections.初次感染 SARS-CoV-2 奥密克戎 BA.1 和 BA.2 株后中和抗体的不同反应特征
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A Detailed Overview of SARS-CoV-2 Omicron: Its Sub-Variants, Mutations and Pathophysiology, Clinical Characteristics, Immunological Landscape, Immune Escape, and Therapies.关于 SARS-CoV-2 奥密克戎的详细概述:其亚变体、突变和病理生理学、临床特征、免疫状况、免疫逃逸以及治疗方法。
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SARS-CoV-2 Omicron BA.5: Evolving tropism and evasion of potent humoral responses and resistance to clinical immunotherapeutics relative to viral variants of concern.SARS-CoV-2 奥密克戎 BA.5:与关注的病毒变体相比,其对潜在体液反应的趋化性和逃逸能力以及对临床免疫疗法的耐药性不断进化。
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The humoral and cellular immune evasion of SARS-CoV-2 Omicron and sub-lineages.SARS-CoV-2 奥密克戎及其亚谱系的体液和细胞免疫逃逸。
Virol Sin. 2022 Dec;37(6):786-795. doi: 10.1016/j.virs.2022.11.007. Epub 2022 Nov 23.
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Determinants of Spike infectivity, processing, and neutralization in SARS-CoV-2 Omicron subvariants BA.1 and BA.2.SARS-CoV-2 奥密克戎变异株 BA.1 和 BA.2 中刺突感染力、加工和中和的决定因素。
Cell Host Microbe. 2022 Sep 14;30(9):1255-1268.e5. doi: 10.1016/j.chom.2022.07.006. Epub 2022 Jul 18.
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Neutralizing antibodies to SARS-CoV-2 variants of concern including Delta and Omicron in subjects receiving mRNA-1273, BNT162b2, and Ad26.COV2.S vaccines.mRNA-1273、BNT162b2 和 Ad26.COV2.S 疫苗接种者对包括德尔塔和奥密克戎在内的关注变异株 SARS-CoV-2 的中和抗体。
J Med Virol. 2022 Dec;94(12):5678-5690. doi: 10.1002/jmv.28032. Epub 2022 Aug 6.

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Repurposing of Plant-based Antiviral Molecules for the Treatment of COVID-19.将植物源抗病毒分子重新用于治疗新冠肺炎
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Evolution of a globally unique SARS-CoV-2 Spike E484T monoclonal antibody escape mutation in a persistently infected, immunocompromised individual.一名持续感染、免疫功能低下个体中出现全球独特的严重急性呼吸综合征冠状病毒2(SARS-CoV-2)刺突蛋白E484T单克隆抗体逃逸突变的演变过程
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Novel receptor, mutation, vaccine, and establishment of coping mode for SARS-CoV-2: current status and future.新型冠状病毒的新型受体、突变、疫苗及应对模式的建立:现状与未来
Front Microbiol. 2023 Aug 14;14:1232453. doi: 10.3389/fmicb.2023.1232453. eCollection 2023.
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A tale of two waves: Delineating diverse genomic and transmission landscapes driving the COVID-19 pandemic in Pune, India.两波疫情的故事:剖析印度浦那新冠疫情的多样基因组和传播特征。
J Infect Public Health. 2023 Aug;16(8):1290-1300. doi: 10.1016/j.jiph.2023.06.004. Epub 2023 Jun 9.
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A high-frequency mobility big-data reveals how COVID-19 spread across professions, locations and age groups.高频流动性大数据揭示了 COVID-19 在各职业、各地点和各年龄组之间的传播方式。
PLoS Comput Biol. 2023 Apr 27;19(4):e1011083. doi: 10.1371/journal.pcbi.1011083. eCollection 2023 Apr.
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As the SARS-CoV-2 virus evolves, should Omicron subvariant BA.2 be subjected to quarantine, or should we learn to live with it?随着 SARS-CoV-2 病毒的演变,奥密克戎亚变体 BA.2 是否应该被隔离,还是我们应该学会与之共存?
Front Public Health. 2022 Nov 24;10:1039123. doi: 10.3389/fpubh.2022.1039123. eCollection 2022.
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The outbreak of SARS-CoV-2 Omicron lineages, immune escape, and vaccine effectivity.奥密克戎变异株引发的 SARS-CoV-2 疫情、免疫逃逸和疫苗效力。
J Med Virol. 2023 Jan;95(1):e28138. doi: 10.1002/jmv.28138. Epub 2022 Sep 21.

本文引用的文献

1
Diminished neutralization responses towards SARS-CoV-2 Omicron VoC after mRNA or vector-based COVID-19 vaccinations.mRNA 或基于载体的 COVID-19 疫苗接种后对 SARS-CoV-2 奥密克戎变异株的中和反应减弱。
Sci Rep. 2022 Nov 18;12(1):19858. doi: 10.1038/s41598-022-22552-y.
2
Improved Neutralisation of the SARS-CoV-2 Omicron Variant following a Booster Dose of Pfizer-BioNTech (BNT162b2) COVID-19 Vaccine.辉瑞-生物科技(BNT162b2) COVID-19 疫苗加强针接种后对 SARS-CoV-2 奥密克戎变异株的中和能力增强。
Viruses. 2022 Sep 13;14(9):2023. doi: 10.3390/v14092023.
3
Estimated Effectiveness of COVID-19 Vaccines Against Omicron or Delta Symptomatic Infection and Severe Outcomes.奥密克戎或德尔塔变异株感染及重症的 COVID-19 疫苗有效性评估。
JAMA Netw Open. 2022 Sep 1;5(9):e2232760. doi: 10.1001/jamanetworkopen.2022.32760.
4
SARS-CoV-2 Omicron BA.5: Evolving tropism and evasion of potent humoral responses and resistance to clinical immunotherapeutics relative to viral variants of concern.SARS-CoV-2 奥密克戎 BA.5:与关注的病毒变体相比,其对潜在体液反应的趋化性和逃逸能力以及对临床免疫疗法的耐药性不断进化。
EBioMedicine. 2022 Oct;84:104270. doi: 10.1016/j.ebiom.2022.104270. Epub 2022 Sep 18.
5
Heterologous immunization with inactivated vaccine followed by mRNA-booster elicits strong immunity against SARS-CoV-2 Omicron variant.异源接种灭活疫苗后再接种 mRNA 加强针可诱导针对 SARS-CoV-2 奥密克戎变异株的强烈免疫应答。
Nat Commun. 2022 May 13;13(1):2670. doi: 10.1038/s41467-022-30340-5.
6
Severity of omicron variant of concern and effectiveness of vaccine boosters against symptomatic disease in Scotland (EAVE II): a national cohort study with nested test-negative design.苏格兰关注的奥密克戎变异株的严重程度和疫苗加强针预防有症状疾病的效果(EAVE II):一项具有巢式病例对照研究设计的全国队列研究。
Lancet Infect Dis. 2022 Jul;22(7):959-966. doi: 10.1016/S1473-3099(22)00141-4. Epub 2022 Apr 22.
7
Mutational cascade of SARS-CoV-2 leading to evolution and emergence of omicron variant.SARS-CoV-2 突变级联导致奥密克戎变体的进化和出现。
Virus Res. 2022 Jul 2;315:198765. doi: 10.1016/j.virusres.2022.198765. Epub 2022 Mar 31.
8
Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function.选择分析鉴定出奥密克戎变异株 BA.1 中可能影响刺突功能的不寻常突变簇。
Mol Biol Evol. 2022 Apr 11;39(4). doi: 10.1093/molbev/msac061.
9
Sub-optimal neutralisation of omicron (B.1.1.529) variant by antibodies induced by vaccine alone or SARS-CoV-2 Infection plus vaccine (hybrid immunity) post 6-months.接种疫苗后 6 个月,由疫苗单独或 SARS-CoV-2 感染加疫苗(混合免疫)诱导的抗体对奥密克戎(B.1.1.529)变异株的中和效果不佳。
EBioMedicine. 2022 Apr;78:103938. doi: 10.1016/j.ebiom.2022.103938. Epub 2022 Mar 16.
10
Broad Neutralization of SARS-CoV-2 Variants, Including Omicron, following Breakthrough Infection with Delta in COVID-19-Vaccinated Individuals.突破性感染德尔塔变异株后 COVID-19 疫苗接种者对 SARS-CoV-2 变异株(包括奥密克戎)的广泛中和作用。
mBio. 2022 Apr 26;13(2):e0379821. doi: 10.1128/mbio.03798-21. Epub 2022 Mar 17.

“奥密克戎是否温和?”通过其三个谱系的突变景观以及对现有疫苗和治疗性抗体的反应来检验这一说法。

"Is Omicron mild"? Testing this narrative with the mutational landscape of its three lineages and response to existing vaccines and therapeutic antibodies.

机构信息

Department of Botany, Hansraj College, University of Delhi, Delhi, India.

Division of Virology, Defence Research and Development Establishment, Gwalior, Madhya Pradesh, India.

出版信息

J Med Virol. 2022 Aug;94(8):3521-3539. doi: 10.1002/jmv.27749. Epub 2022 Apr 27.

DOI:10.1002/jmv.27749
PMID:35355267
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9088584/
Abstract

SARS-CoV-2 Omicron with its lineages BA.1, BA.2, and BA.3 has triggered a fresh wave of Covid-19 infections. Though, Omicron has, so far, produced mild symptoms, its genome contains 60 mutations including 37 in the spike protein and 15 in the receptor-binding domain. Thirteen sites conserved in previous SARS-CoV-2 variants carry mutations in Omicron. Many mutations have shown evolution under positive selection. Omicron's giant mutational leap has raised concerns as there are signs of higher virus infectivity rate, pathogenesis, reinfection, and immune evasion. Preliminary studies have reported waning of immunity after two-dose primary vaccine regime, need for the boosters, folds reduction in vaccine effectiveness and neutralizing antibodies even after boosting and significant neutralization resistance with the therapeutic monoclonal, polyclonal, and convalescent antibodies against Omicron. The narrative that "Omicron is mild," therefore, needs time to be tested with a deeper, scientific dwelling into the facts.

摘要

SARS-CoV-2 的奥密克戎及其谱系 BA.1、BA.2 和 BA.3 引发了新一轮的新冠疫情。虽然奥密克戎迄今产生的症状较轻,但它的基因组包含 60 个突变,其中 37 个在刺突蛋白上,15 个在受体结合域。在以前的 SARS-CoV-2 变体中,有 13 个保守位点发生了突变。奥密克戎的巨大突变飞跃引起了人们的担忧,因为有迹象表明病毒的感染率、发病机制、再感染和免疫逃避更高。初步研究报告称,两剂初级疫苗方案后免疫力下降,需要加强针,即使加强后疫苗有效性和中和抗体折叠减少,以及针对奥密克戎的治疗性单克隆、多克隆和恢复期抗体的显著中和抗性。因此,“奥密克戎是温和的”这一说法需要时间来通过更深入、科学的研究来验证。