Nagano Masanobu, Ishida Satoshi, Suga Hiroaki
Graduate School of Science, The University of Tokyo 113-0033 Japan.
RSC Chem Biol. 2022 Jan 26;3(3):295-300. doi: 10.1039/d1cb00225b. eCollection 2022 Mar 9.
Autoinducing peptides I and IV (AIP-I/IV) are naturally occurring cyclic thiodepsipeptides (CTPs) bearing a Ser-Thr-Cys-Asp/Tyr (STC[D/Y]) tetrapeptide motif, where the Cys thiol (C) in the side-chain is linked to the Met C-terminal carboxylic acid (M) to form 5-residue macrothiolactones,C(D/Y)FIM. We have recently reported that CTPs containing SXCX motifs spontaneously undergo macrolactonization to yield cyclic depsipeptides (CDPs) by an unprecedented rapid -to- acyl transfer to the upstream Ser hydroxyl group. Interestingly, even though the STC[D/Y] motif in AIP-I/IV is a member of the SXCX motif family, it maintains the CTP form. This suggests that AIP-I/IV have a structural or chemical motive for avoiding such an -to- acyl transfer, thus retaining the CTP form intact. Here we have used genetic code reprogramming to ribosomally synthesize various AIP-I analogs and studied what the determinant is to control the formation of CTP CDP products. The study revealed that a Gly substitution of the inner Asp/Tyr or Met residues in the thiolactone drastically alters the resistance to the promotion of the -to- acyl transfer, giving the corresponding CDP product. This suggests that the steric hindrances originating from the α-substituted sidechain in these two amino acids in the AIP-I/IV thiolactone likely play a critical role in controlling the resistance against macrolactone rearrangement to the upstream Ser residue.
自诱导肽I和IV(AIP-I/IV)是天然存在的环状硫代缩肽(CTP),带有Ser-Thr-Cys-Asp/Tyr(STC[D/Y])四肽基序,其中侧链中的半胱氨酸硫醇(C)与甲硫氨酸C末端羧酸(M)相连,形成5个残基的大环硫内酯,C(D/Y)FIM。我们最近报道,含有SXCX基序的CTP会自发地进行大环内酯化反应,通过前所未有的快速酰基转移到上游丝氨酸羟基上,生成环状缩肽(CDP)。有趣的是,尽管AIP-I/IV中的STC[D/Y]基序是SXCX基序家族的一员,但它保持CTP形式。这表明AIP-I/IV有一个结构或化学动机来避免这种酰基转移,从而保持CTP形式完整。在这里,我们使用遗传密码重编程在核糖体上合成了各种AIP-I类似物,并研究了控制CTP和CDP产物形成的决定因素是什么。研究表明,硫内酯中内部Asp/Tyr或Met残基的甘氨酸取代会极大地改变对酰基转移促进作用的抗性,从而产生相应的CDP产物。这表明,AIP-I/IV硫内酯中这两个氨基酸的α-取代侧链产生的空间位阻可能在控制对上游丝氨酸残基大环内酯重排的抗性中起关键作用。