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Bopyroides hippolytes 的系统发育位置,并对等足目(Isopoda:Epicaridea:Bopyridae)中线粒体基因组重排进行评论。

Phylogenetic position of Bopyroides hippolytes, with comments on the rearrangement of the mitochondrial genome in isopods (Isopoda: Epicaridea: Bopyridae).

机构信息

School of Life Science, Shanxi Normal University, Taiyuan, 030031, P. R. China.

Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611-7800, USA.

出版信息

BMC Genomics. 2022 Apr 2;23(1):253. doi: 10.1186/s12864-022-08513-9.

DOI:10.1186/s12864-022-08513-9
PMID:35366795
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8976331/
Abstract

BACKGROUND

Classification of parasitic bopyrids has traditionally been based on morphological characteristics, but phylogenetic relationships have remained elusive due to limited information provided by morphological data and tendency for loss of morphological features as a result of parasitic lifestyle. Subfamily Argeiinae was separated from Bopyrinae based on morphological evidence, although the assignment of all genera has not been phylogenetically evaluated. Bopyroides hippolytes has been traditionally classified in Bopyrinae, but divergent morphological characters make this assignment questionable. To investigate the relationship of bopyrines, we sequenced the complete mitochondrial genome of B. hippolytes and four mitochondrial genes of two other Bopyrinae.

RESULTS

The phylogenetic trees based on separate and combined cox1and 18S sequence data recovered Bopyridae as robustly monophyletic, but Bopyrinae as polyphyletic. Bopyroides hippolytes was a close sister to Argeia pugettensis, type species to Argeiinae. Mitochondrial phylogenomics also suggested that B. hippolytes was close to Argeiinae. We also found a novel gene order in B. hippolytes compared to other isopods.

CONCLUSIONS

Bopyroides hippolytes should be excluded from the Bopyrinae and has a close affinity with Argeia pugettensis based on molecular and morphological data. The conserved syntenic blocks of mitochondrial gene order have distinctive characteristics at a subordinal level and may be helpful for understanding the higher taxonomic level relationships of Isopoda.

摘要

背景

寄生桡足类的分类传统上基于形态特征,但由于形态数据提供的信息有限,以及寄生生活方式导致形态特征丧失的趋势,系统发育关系仍然难以捉摸。亚科 Argeiinae 是根据形态证据从 Bopyrinae 中分离出来的,尽管尚未对所有属的归属进行系统发育评估。Bopyroides hippolytes 传统上被归类为 Bopyrinae,但不同的形态特征使得这种分类值得怀疑。为了研究桡足类的关系,我们对 B. hippolytes 的完整线粒体基因组和其他两种 Bopyrinae 的四个线粒体基因进行了测序。

结果

基于单独和组合 cox1 和 18S 序列数据构建的系统发育树恢复了桡足类作为一个稳健的单系群,但 Bopyrinae 是多系的。Bopyroides hippolytes 是 Argeia pugettensis 的近亲,后者是 Argeiinae 的模式种。线粒体系统基因组学也表明 B. hippolytes 与 Argeiinae 密切相关。与其他等足目动物相比,我们还发现了 B. hippolytes 中一种新的基因排列。

结论

基于分子和形态数据,Bopyroides hippolytes 应从 Bopyrinae 中排除,并且与 Argeia pugettensis 密切相关。线粒体基因排列的保守同线性块在亚目水平上具有独特的特征,可能有助于理解等足目动物的更高分类水平关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d60f/8976331/a28a7af88187/12864_2022_8513_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d60f/8976331/f3751e13510f/12864_2022_8513_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d60f/8976331/be47fa14a16b/12864_2022_8513_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d60f/8976331/89642264de78/12864_2022_8513_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d60f/8976331/a28a7af88187/12864_2022_8513_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d60f/8976331/f3751e13510f/12864_2022_8513_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d60f/8976331/be47fa14a16b/12864_2022_8513_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d60f/8976331/89642264de78/12864_2022_8513_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d60f/8976331/a28a7af88187/12864_2022_8513_Fig4_HTML.jpg

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